Protein Info for Sama_2315 in Shewanella amazonensis SB2B

Name: flgE
Annotation: flagellar hook protein FlgE (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 453 TIGR03506: flagellar hook-basal body protein" amino acids 1 to 435 (435 residues), 338 bits, see alignment E=5e-105 PF00460: Flg_bb_rod" amino acids 3 to 33 (31 residues), 37.2 bits, see alignment (E = 3.3e-13) PF07559: FlaE" amino acids 182 to 333 (152 residues), 98.8 bits, see alignment E=5.6e-32 PF06429: Flg_bbr_C" amino acids 374 to 452 (79 residues), 57.4 bits, see alignment E=1.9e-19

Best Hits

KEGG orthology group: K02390, flagellar hook protein FlgE (inferred from 100% identity to saz:Sama_2315)

Predicted SEED Role

"Flagellar hook protein FlgE" in subsystem Flagellum

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A1S814 at UniProt or InterPro

Protein Sequence (453 amino acids)

>Sama_2315 flagellar hook protein FlgE (RefSeq) (Shewanella amazonensis SB2B)
MSFNIALSGIAAAQKDLNTTANNIANVNTTGFKESRAEFADVYAASIFSNSKTQVGGGVT
TTQVAQQFHQGSLQFTSNALDLAISGGGFFVTSADPSARDYSFTRAGAFKVDSNNYLVDS
AGNFLQTFPVDKFGNSTSVSLTTTRPVQIPDTAGSPVMTENVGVQMNLNAGEKTKDPAAF
DPDDPTTFNNSTSSTIYDSLGEPHILTTYFVRPNDGAYTGENNWVAYYALDGQPVNLGGG
AGTYQTDTDGDGVPDTPATAQTTGGWTGSVLTFNSTGTYTGTNPAIITTEPLGIGGAGIL
GPGADGSQTLTINFANPTQYASAFEVTELTQDGTTVGRLTNVEVGEDGLIKAAYSNGSTV
PLGRVALVRFANEQGLTQVGNTSWKESLASGTALAGEANSGTFGAIRSAALEQSNVDLTT
ELVDLISAQRNFQANSRTLEVNNTLQQTILQIR