Protein Info for Sama_2257 in Shewanella amazonensis SB2B

Annotation: DegT/DnrJ/EryC1/StrS family protein (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 357 PF01041: DegT_DnrJ_EryC1" amino acids 13 to 355 (343 residues), 342 bits, see alignment E=7.1e-106 PF01212: Beta_elim_lyase" amino acids 18 to 164 (147 residues), 33.3 bits, see alignment E=5.1e-12 PF00155: Aminotran_1_2" amino acids 36 to 204 (169 residues), 35.1 bits, see alignment E=1.3e-12

Best Hits

Swiss-Prot: 42% identical to DEGT_GEOSE: Pleiotropic regulatory protein (degT) from Geobacillus stearothermophilus

KEGG orthology group: None (inferred from 100% identity to saz:Sama_2257)

Predicted SEED Role

"Glutamate--UDP-2-acetamido-2-deoxy-D-ribohex-3-uluronic acid aminotransferase (PLP cofactor)"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A1S7V6 at UniProt or InterPro

Protein Sequence (357 amino acids)

>Sama_2257 DegT/DnrJ/EryC1/StrS family protein (RefSeq) (Shewanella amazonensis SB2B)
MQFIDLAAQYKHLKEKIDARIQAVLEHGHYIMGPEVAELEDKLAEYVGVKHAITCANGTD
ALTLVMMALGIKEGDAVFCPTFTFFATAEVIAYEGATPVFVDSDADTFNICPLDLEKQIQ
KVIAEGKLKPAAIIAVDLFGLPANYPELEKIAKQYGLKLVEDAAQGFGGEIEDKRAGSFG
DIATTSFFPAKPLGCYGDGGAIFTNDDHYAELIRSLRVHGKGKDKYDNIRVGMNSRLDTL
QAAVLLEKLAAFPQELISRNKAAKRYSRELSSIYKTPVTPVGYLSSWAQYTVVAEDRNAE
IEMYKSKGIPTMIYYGTCMHQQTAFEALGYQDSDFPVASRLAKTVFSLPMHGYMMDK