Protein Info for Sama_2164 in Shewanella amazonensis SB2B

Annotation: sensory box protein (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1431 signal peptide" amino acids 1 to 22 (22 residues), see Phobius details transmembrane" amino acids 719 to 737 (19 residues), see Phobius details PF07494: Reg_prop" amino acids 48 to 70 (23 residues), 22.2 bits, see alignment (E = 4.8e-08) PF07495: Y_Y_Y" amino acids 647 to 707 (61 residues), 52.3 bits, see alignment (E = 1.9e-17) PF08447: PAS_3" amino acids 795 to 862 (68 residues), 52.5 bits, see alignment 2.2e-17 TIGR00229: PAS domain S-box protein" amino acids 800 to 875 (76 residues), 23.8 bits, see alignment 3.9e-09 amino acids 873 to 994 (122 residues), 50.9 bits, see alignment E=1.7e-17 PF00989: PAS" amino acids 877 to 984 (108 residues), 35.6 bits, see alignment 3.9e-12 PF13188: PAS_8" amino acids 877 to 909 (33 residues), 20.9 bits, see alignment (E = 1.2e-07) PF08448: PAS_4" amino acids 883 to 989 (107 residues), 28.4 bits, see alignment 7.7e-10 PF13426: PAS_9" amino acids 887 to 985 (99 residues), 45 bits, see alignment 5.1e-15 TIGR00254: diguanylate cyclase (GGDEF) domain" amino acids 995 to 1153 (159 residues), 116.5 bits, see alignment E=9.9e-38 PF00990: GGDEF" amino acids 999 to 1151 (153 residues), 137.4 bits, see alignment E=1.8e-43 PF00563: EAL" amino acids 1173 to 1405 (233 residues), 238 bits, see alignment E=4.4e-74

Best Hits

KEGG orthology group: None (inferred from 100% identity to saz:Sama_2164)

Predicted SEED Role

"diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s)" in subsystem Bacterial hemoglobins

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A1S7L3 at UniProt or InterPro

Protein Sequence (1431 amino acids)

>Sama_2164 sensory box protein (RefSeq) (Shewanella amazonensis SB2B)
MHKVLANLITLLLLVTWYVDAHQEPVSILPQPPSLIHLNADAFSTVQGLSQNTVTSVVED
KNGYIWLGTLNGLNRFDGSEFKKYYSEDFSNLSSAFIHSLEIFDEKLIIGTDNSLLAMDP
DTEKLKLILESKEAITFLKKENNNLLLGSSNSIKVLDSDYNIIFEIKSNKIDFVKQIVKN
DEHYLIRNHDGTILKTKNSEKDVEYITRESISIGFDGVKLVIDKPDGIYEYTRNNELIKI
SNTVYDNVTYIESGKISLKKNIVTITENKIEISGEIDSTFSLLSPLIFRVKNGIIIASMN
NGFLYIQDHKNIVKTGSAQKNNNIWFIENHNENLFVADETANIKIYSKEQLELVGEVDTK
AIGFKAISIINDDELIYCSTYGIFKHNLSNKTQIKISDRIAYALAYNENSNKIYIGTNDL
KLVSIDLNSFEEIILNSSNLPIFQLKISPKGGDLYISHQGGLSVIRNNEAAIKDIISEHI
VYGIEFFDTYIAVATNSGILKHEISSNKTETLVNMDKPVYSLGAYDGWIFGSSINSIVVA
AQERVYTLYSSNGAQAEYNNQSFGTFANGVILGGIQGLSIFNKKDFQNFMMKVPERLNTN
LTGLYLFNKEVKNDSEIMKKSINSSESITLKYSDYPFAIQFSSPLYSNSNVTHYYRLKGL
SDEWIAAQKTKIATYTNLSAGKYNFEVYAKDNLSQLSGPIKSVSVIVTPPWWMSLEAKLA
YALIFLLITSGIIKAALRRREVQRQIAISEERLKLSLWGSGDEMWDWDIETGKIYRSNIW
GSLEFPKDGHRSGKDDEESNIHPQDQERVREALNRHFYGETDHFEAAYRVKGKDGHWVWI
LDRAKIVERDDSENALRMTGTIKNINNFKQAEEQLRLFERAIENISEGMFILDHEFRFVE
VNEACCDICLMDKDSFIGTQLQFSCYPDAYSEQVRIILRQQGRWSAEVESRRGDNSTFLM
ELTVDAIYDEQGTLSHFVGVFSDISRRKQQEEELRKLTNNDLLTGLPNRSNLQVSLNNLV
KKDTHHTLMVLDLDNFKKINDSLGHQVGDELLQLVSRRMSAALPGHTSLYRLGGDEFAVL
LDKDPDIGSAAAIAKGLVDAFVAPFELAGEKLVVGVSIGIVLYPEDEQNEQALLRKADIA
MYHAKSAGGNRYQFYSESLNRNALRQLEVENLIRDGLRDDLFEVYYQPKVDLRNSRMAGM
EALVRLNHPTQGLIPPSEFIPLAEETGLIVEIGDLVMRKACFAAQRWREQGLFDGRVAVN
LSSRQFALTDLQQRIESILRLTKLPAANLELEITEGTVIKQPEKAIKVMQQLAKMGVSLA
LDDFGTGYSSLSYLKRFPIHTLKIDKAFVDDIDKSDRDLKMVDSIITIAHNMGLTVVGEG
VEVPSQLNILRALKCEEVQGYIYSKAVPEAEFTTLLKQDMGEFLNQKYNQR