Protein Info for Sama_2151 in Shewanella amazonensis SB2B

Annotation: hypothetical protein (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 900 937 signal peptide" amino acids 1 to 30 (30 residues), see Phobius details transmembrane" amino acids 267 to 288 (22 residues), see Phobius details TIGR03505: FimV N-terminal domain" amino acids 57 to 130 (74 residues), 96.6 bits, see alignment E=5.6e-32 TIGR03504: FimV C-terminal domain" amino acids 893 to 935 (43 residues), 55.4 bits, see alignment 4.7e-19

Best Hits

KEGG orthology group: K07288, uncharacterized membrane protein (inferred from 100% identity to saz:Sama_2151)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A1S7K0 at UniProt or InterPro

Protein Sequence (937 amino acids)

>Sama_2151 hypothetical protein (RefSeq) (Shewanella amazonensis SB2B)
MNFRTSYLVGILASVLAVSTIPQFSEVRAAEPLKITGPDGQSRETQSRQYGPTTVQDTFW
SIAQKVRPDNSVSVYQVMAAIYDANPHAFSSANYNTLEKGMILLIPSKEVMLAIPKNLAQ
QRALEQDRAWRTGKVEPKQATAKPVTAKPAAQEAPKAVTEPAKVEAKPAPVPVVDPKLVE
ENQALSAEISRLTEELNVRKNDVESLSAQVEQLTEEVQTLKANLAATTEESEALRTENKT
LKQAQALAEVEANKPGELWRSLMDSPLMLILGAVVPALLILMAVWLFLRRRRGGADGDVG
ETAKSADAPLAAAAAAGAVAVAASADEEEMAIRLDPEEEESLDSLLDMGNVDLAPETLPE
ETSADLFVEQADDFADDGQSLDDLWAEAMGEQDEGELNAEAEADLDALMAGFEEETPDVA
KEEDLDALLAGFDEPEQTITTTEESQPEKDELSDAIAAELETEVADDTVSEDDLDALLAG
FNEPVEAMAESVADSDEAQSDDLAEAIAAELESELAGNDEVSSDEDLDALLAGFDAPSAS
DDGEDDLKTPSTETLEADWSEAIAAELEGEVAAEAEAEEDLDALLASFATESESEASNGL
ENSADDVLAADETTSPVDDAFANVLESELSLADENADEDLNALLTDLDKGDEAPIEDITA
GLGDELPLSDEDDDLDSLLAGFDKEEETGLEDAALAAAAVATAASISAATSNKESEKASE
KDKTAEKGAHDADPVAVSAKDSGFFDDLKGKKGAAGSNMLEWESIAPPDTKKPSLDVSDD
ELLSAFAAEHDDSDDDAFVLDVDADHSMTVDEALAALDASEKSKRQSKAEIDADLSNFQK
ENGFIDIDKLLNDADDTEPEPYRELDMDIGEVESLIGGAAMVDVDDEENSVNAKLDLARA
YIEIDDKDSAKALLKEVEMDGNERQKQEAANLLQDIG