Protein Info for Sama_2141 in Shewanella amazonensis SB2B

Annotation: hypothetical protein (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 154 signal peptide" amino acids 1 to 24 (24 residues), see Phobius details transmembrane" amino acids 62 to 92 (31 residues), see Phobius details amino acids 99 to 117 (19 residues), see Phobius details amino acids 123 to 145 (23 residues), see Phobius details PF06496: DUF1097" amino acids 8 to 140 (133 residues), 128.1 bits, see alignment E=1.5e-41

Best Hits

Swiss-Prot: 44% identical to YCDZ_ECOLI: Inner membrane protein YcdZ (ycdZ) from Escherichia coli (strain K12)

KEGG orthology group: None (inferred from 100% identity to saz:Sama_2141)

Predicted SEED Role

"Inner membrane protein YcdZ"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A1S7J0 at UniProt or InterPro

Protein Sequence (154 amino acids)

>Sama_2141 hypothetical protein (RefSeq) (Shewanella amazonensis SB2B)
MFERLPVALAAGLLAALWVAVSGQLSWVTWVGFLGCSAYFAQGELSPRGVMSTWATTLSG
VFWAWLILHGAEMLTMGYSAAILTGIVTAFMCLQASKRLLAFIPGTFLGCCAMFALHGDF
LVVLPPLLVGALMGYAMSLLSGLLARYMPFAVAD