Protein Info for Sama_2050 in Shewanella amazonensis SB2B

Annotation: hypothetical protein (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 249 TIGR00486: dinuclear metal center protein, YbgI/SA1388 family" amino acids 6 to 248 (243 residues), 193.1 bits, see alignment E=3.3e-61 PF01784: DUF34_NIF3" amino acids 8 to 237 (230 residues), 204.3 bits, see alignment E=1.2e-64

Best Hits

Swiss-Prot: 55% identical to GCH1L_ALLVD: GTP cyclohydrolase 1 type 2 homolog (Alvin_0067) from Allochromatium vinosum (strain ATCC 17899 / DSM 180 / NBRC 103801 / NCIMB 10441 / D)

KEGG orthology group: None (inferred from 100% identity to saz:Sama_2050)

Predicted SEED Role

"FIG137478: Hypothetical protein YbgI"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A1S799 at UniProt or InterPro

Protein Sequence (249 amino acids)

>Sama_2050 hypothetical protein (RefSeq) (Shewanella amazonensis SB2B)
MERSVLGQYLADFLQTGKFKDYAPNGLQIEGKAEIQIIVTGVTACQALIERAIELKADAI
LVHHGFFWKNEPDVLVGMKQRRIKSLLAHDINLFGYHLPLDAHPVVGNNATLGRRMGILD
AEAFEAVGDGLLWGGSLDTALSGEAFAGLLAKVLGREPLHIDADKPVQRLAWCTGGAQDY
IDLAVSLGVDAFISGEVSERTFHSAKEQGIHYFAAGHHATERYGIEALGEHLRREFGLTH
HFVDIDNPV