Protein Info for Sama_2029 in Shewanella amazonensis SB2B

Annotation: membrane-bound lytic transglycolase-related protein (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 401 signal peptide" amino acids 1 to 22 (22 residues), see Phobius details TIGR02283: lytic murein transglycosylase" amino acids 26 to 320 (295 residues), 371.2 bits, see alignment E=1.9e-115 PF13406: SLT_2" amino acids 26 to 316 (291 residues), 380.9 bits, see alignment E=4e-118 PF01471: PG_binding_1" amino acids 336 to 391 (56 residues), 62.4 bits, see alignment 3.7e-21

Best Hits

KEGG orthology group: K08305, membrane-bound lytic murein transglycosylase B [EC: 3.2.1.-] (inferred from 100% identity to saz:Sama_2029)

Predicted SEED Role

"Membrane-bound lytic murein transglycosylase B precursor (EC 3.2.1.-)" in subsystem Peptidoglycan Biosynthesis (EC 3.2.1.-)

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 3.2.1.-

Use Curated BLAST to search for 3.2.1.-

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A1S778 at UniProt or InterPro

Protein Sequence (401 amino acids)

>Sama_2029 membrane-bound lytic transglycolase-related protein (RefSeq) (Shewanella amazonensis SB2B)
MKYPFILASSLSILTAFSAGAEPRTFEQCIADIKVDAQSAGISPQSIAVLDSVKPLQRVV
ELDRSQPEFTQTFADYFNKRVTERRISEGQKMLKTHGALLNKLQKEYGVPPQYLLAFWGL
ETNFGGYKGKMPVLDALATLACDARRSQYFTQELLQALRLGDKFGLSFEDMVGSWAGAMG
HTQFMPTTYLTYAVDGDGDGKVDLWNSTEDALSSAANFLMQLGWQRNERWGREVLLPKHY
DYESLGRDHRKPLAEWQTLGLTTVFGHPIPTAPMDAALYLPAGHTGPAFLGYSNFEVIQR
WNRSEFYALAVGHLADRINGAKPLKVAPPLQPRRTRDGLKAMQQKLIELGYDIGAADGII
GSKTSAAIRDFQRRNKLVPDGFADDATLNALGLDVASISSK