Protein Info for Sama_1955 in Shewanella amazonensis SB2B

Annotation: sensory box histidine kinase (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 849 transmembrane" amino acids 20 to 44 (25 residues), see Phobius details amino acids 333 to 341 (9 residues), see Phobius details amino acids 345 to 352 (8 residues), see Phobius details amino acids 384 to 404 (21 residues), see Phobius details TIGR00229: PAS domain S-box protein" amino acids 483 to 604 (122 residues), 45.9 bits, see alignment E=2.9e-16 PF00989: PAS" amino acids 485 to 589 (105 residues), 23.7 bits, see alignment E=6.3e-09 PF08448: PAS_4" amino acids 490 to 599 (110 residues), 54.6 bits, see alignment E=1.8e-18

Best Hits

KEGG orthology group: None (inferred from 100% identity to saz:Sama_1955)

Predicted SEED Role

"Sensory box histidine kinase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A1S704 at UniProt or InterPro

Protein Sequence (849 amino acids)

>Sama_1955 sensory box histidine kinase (RefSeq) (Shewanella amazonensis SB2B)
MNRSKAYVSHTLHPRWRNSLPFRVGLLQSLIATLLLLATLWILLGSQKEERLAQEMNLNL
SQGQLVQARLRDLTAQLDTLVVAIADVAGTQRNDIATIENTIPSLLSLPNHKDVVASGGI
WPEKGHPLGQENESRSLFWVRDLLGQLRKNDGYNQSSDHYFDELWYKPMRLFPAGRVFWS
PSYIDPHTQESMVTASVPIWQEHEFQGVATIDVSLSSLSSYLTESRKELGGYVILLDQFN
QVLSAPLPGAEQSLPEHASLPDLATLTQRYPQLSALLSLVEDADTLFIKDAQTHQVITQE
QFLTMTPSNFPLGKQMYQAIINTSALAMPQSPVLLATLAIDADPLIAAPSLVSVYRMPGT
FWKVITVTPKSSFKNEALLLVERAGLYLLLAQVLALLLMIFVQHKLYIKPIARMVSALKA
EDAAHLELQASQREDEIGVLASALVARTHQLEIAMASLDASNLALEQQLEVQQEAQQDLL
AHKERLTALLKSSPNLIFIKDIAGRYLMVNDKFCETIGLDRHRILGATDRQLFSSDLAQA
YGESDQRVMTQDAPLQFEETLPTRLGEIRFQMTKFAIRDDDDNLRGTGAIAFDIQNRKRI
EKELLERITTLEHSLSLCSSENGKLQQKLQLAEFELSQKTQNIEETKAKGEAWGTERRLF
KSWLRDLVSLIAREQENLLAKACNPGATPMEKLKDALSEHAERLRVLELLTGRHKASQRA
VPMDVLQQLTHLFQSELAGRDIQIRLEGERNVSVQLETWQLTLLIFSLLKLLCTQTDNAP
QGNIVTVCVDGSGPDCLIRFDSQGASSDIIAPELSALTAWLERQFGGSLTLCHSLTVATI
VDCRLPFAD