Protein Info for Sama_1894 in Shewanella amazonensis SB2B

Annotation: hypothetical protein (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 520 transmembrane" amino acids 12 to 32 (21 residues), see Phobius details PF02646: RmuC" amino acids 180 to 477 (298 residues), 358.8 bits, see alignment E=9.8e-112

Best Hits

Swiss-Prot: 49% identical to RMUC_VIBCH: DNA recombination protein RmuC homolog (rmuC) from Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)

KEGG orthology group: K09760, DNA recombination protein RmuC (inferred from 100% identity to saz:Sama_1894)

Predicted SEED Role

"DNA recombination protein RmuC" in subsystem DNA repair, bacterial

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A1S6U3 at UniProt or InterPro

Protein Sequence (520 amino acids)

>Sama_1894 hypothetical protein (RefSeq) (Shewanella amazonensis SB2B)
MTPLDLFSLPQWIAISALCFLFLMIGALINQILTRKRWESLDALRIEQHQAAICALESQL
DEHKNQLDDKEDRLSFFQNRIEEVSQRYGEAKAEAQRLPELEQKLADTHRQLMEARLETA
KAIAMQQSISAKFDAERQAFEEKLALLESAEARLKLQFENLANKIFEQRAEQLKGQNLLQ
LDAVIGPLKQQIDGFRKQVNESYSIEQAERSSLKHQLEQLASLNVKMSQDAINLTNALKG
DNKQQGNWGEVILERVLSESGLREGHEYHTQQELKAENGQKFKPDVIVHLPGEKDVVIDA
KMSLTAYERYFNASEDADKAQALKEHVLSVRSHIKLLSQKDYQHLHGLKTLDYVLMFIPV
EPAFLLALEQEPGLVGYALEHNIMLASPTNLLVALRTIHNIWRYEYQNLHAQHIAKAAGK
IYDKLCIYVDEMDKLGRSLDTAQKSFQSAMGKLSTGRGNLIRQAHQMRQLGVESSKQLDK
QLLDNALDDSMEAGEDDDTVADTLAVNGSTPVPHLTNQRQ