Protein Info for Sama_1892 in Shewanella amazonensis SB2B

Annotation: putative sulfite oxidase subunit YedZ (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 208 transmembrane" amino acids 9 to 30 (22 residues), see Phobius details amino acids 42 to 62 (21 residues), see Phobius details amino acids 82 to 104 (23 residues), see Phobius details amino acids 116 to 137 (22 residues), see Phobius details amino acids 149 to 166 (18 residues), see Phobius details amino acids 172 to 188 (17 residues), see Phobius details PF01794: Ferric_reduct" amino acids 55 to 160 (106 residues), 59.4 bits, see alignment E=1.9e-20

Best Hits

KEGG orthology group: None (inferred from 100% identity to saz:Sama_1892)

Predicted SEED Role

"FIG001196: Membrane protein YedZ"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A1S6U1 at UniProt or InterPro

Protein Sequence (208 amino acids)

>Sama_1892 putative sulfite oxidase subunit YedZ (RefSeq) (Shewanella amazonensis SB2B)
MRLTPGRLFWLKCALHTGFILPLLWLGWGVALNQLGGDPVQYLIHFTGKGTLHGLMLTLL
ITPLAKRLKMGPLMQTRRLIGLWTFSYGVLHLLAFVSLDLLFAWNMLLTEILKRPYLLVG
MAGLVILTALAVTSLKSLQRRMGPHWQRLHNWVYLVALLAPVHYLWSVKSEIIEPSLYLL
LCLWLLWLRREKLLNTAFIRKVFSPLSS