Protein Info for Sama_1851 in Shewanella amazonensis SB2B

Annotation: hypothetical protein (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 386 signal peptide" amino acids 1 to 23 (23 residues), see Phobius details PF12060: DUF3541" amino acids 42 to 262 (221 residues), 324.1 bits, see alignment E=2.5e-101

Best Hits

KEGG orthology group: None (inferred from 100% identity to saz:Sama_1851)

Predicted SEED Role

"FIG01058596: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A1S6Q0 at UniProt or InterPro

Protein Sequence (386 amino acids)

>Sama_1851 hypothetical protein (RefSeq) (Shewanella amazonensis SB2B)
MTFASKTCALLLCASLLPAANAADSKAEDAKHSSNNATEPMGTTAVYQAIKQQLEASLFE
LPPRVQGHYGIRMYRMTGDDKYANAALVDLYAVTESQAFYACNLDKPGFIGSAAEEAIEA
LGRGPRASARKKALDSFPEFLFYTDVLLRFASRIDEFGLEGPCHDKMIAALKATDLKQGL
TSPEMIESWAAQLANYVYWAKQLGVGDYLKDYRDAFNKVYPASRDQNLDKAQFRNKLYGM
THFVFAASGYYQAPVDASEFAWVLEYFEANIDRILKDATDDIIAEVGVSFLLAGKDDSDV
VSKTRRHIVKAFDEEHDIIPSPRGNPDLALGEHRNMLAMMLLQWPQTLSPGPYLAELKAT
KKYLPKMVTPKTAPSAKSKKPDNLKK