Protein Info for Sama_1749 in Shewanella amazonensis SB2B

Annotation: hypothetical protein (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 686 transmembrane" amino acids 33 to 51 (19 residues), see Phobius details PF05787: PhoX" amino acids 81 to 649 (569 residues), 477.6 bits, see alignment E=3.4e-147

Best Hits

KEGG orthology group: K07093, (no description) (inferred from 100% identity to saz:Sama_1749)

Predicted SEED Role

"Predicted phosphatase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A1S6E8 at UniProt or InterPro

Protein Sequence (686 amino acids)

>Sama_1749 hypothetical protein (RefSeq) (Shewanella amazonensis SB2B)
MSKATHNPNCFNQSNNTPFAEVLDRHLSRRNFVKSGLGLGAMTAFAGLGLAGCGSDSSPV
TPPVTTPTPLPPPTQSDITLGFDSIPGSLTDGVSIPQGYRAQVLAPWGTPLNDKAAPWKD
DGSNTSDDQANAVGQNHDGMHFFPLNDAADDGLLCINHEYIEPDALHPTGPSVDPVTGLR
TILDEVRKEINAHGVTVVRIKRTNGVWEVIKNDPHNRRFTGATTFDMSGPVAYSDHLVTA
FSPDGSQTRGTLNNCGNGSTPWGTYLTCEENWPEYFVNKGEMSAANARIGVATKDTRYGW
NHFAGHDEERADEFSRFDITPTGISALYDYRNEANGHGYIVEIDPYSPNQRGIKRTALGR
FRHEGCTFGKLEEGKPVVFYSGHDSRFEYLYKYVSDALWSEADANSSNRIATGDKYMNDG
TLYVARFDEDGQGEWLPLVPGTVTTDGKTLGEHLGTLADIIVNTAGAADLVGATPMDRPE
WCAVDPFTGSVYLTLTNNTRRTEANPANPRLKNSFGHIIRWNEGASDTEFSWDIFVFGSP
ANGDSETNLSGLTDENQFASPDGLAFDPRGIMWVQTDNGAKEVTEHTNDQMLAVVPSRLL
DAEGNQKPLRADNQMELRRFFVGPNDCEVTGVAFSPDYQSLFANIQHPGNWPYSDDATQI
TPAGISIRPRAATVVISKVDGTEVGV