Protein Info for Sama_1716 in Shewanella amazonensis SB2B

Annotation: AcrB/AcrD/AcrF family transporter (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1014 transmembrane" amino acids 12 to 29 (18 residues), see Phobius details amino acids 335 to 356 (22 residues), see Phobius details amino acids 363 to 382 (20 residues), see Phobius details amino acids 393 to 414 (22 residues), see Phobius details amino acids 434 to 454 (21 residues), see Phobius details amino acids 466 to 489 (24 residues), see Phobius details amino acids 520 to 543 (24 residues), see Phobius details amino acids 856 to 875 (20 residues), see Phobius details amino acids 882 to 902 (21 residues), see Phobius details amino acids 908 to 929 (22 residues), see Phobius details amino acids 956 to 973 (18 residues), see Phobius details amino acids 983 to 1006 (24 residues), see Phobius details PF00873: ACR_tran" amino acids 3 to 1005 (1003 residues), 521.4 bits, see alignment E=2.2e-160

Best Hits

KEGG orthology group: None (inferred from 100% identity to saz:Sama_1716)

Predicted SEED Role

"Acriflavin resistance protein" in subsystem Multidrug Resistance Efflux Pumps

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A1S6B5 at UniProt or InterPro

Protein Sequence (1014 amino acids)

>Sama_1716 AcrB/AcrD/AcrF family transporter (RefSeq) (Shewanella amazonensis SB2B)
MDIARYSIAKRTSVWVIICLLLLGGYLSYQQLGRFEDPEFVIRQAVVITPYPGATAKEVA
DEVTDVIESAVQALQEVKEVKSVSKQGMSEVTVEIDLQFARSKGELDQVWDKLRRKIGDA
QRQLPKGAGPAIVNDDFSDVYALFYAVTGPGYSDKQLYDYVDFLSKELALVDGVAKTAIM
ANRQEEIYLEFSAERLAALGMNAQQIFSVLQKQNLVTVAGELPAGNMRLPVIPQSAVSSL
DALKNLPLGLGNQGQILRLSDVANVVRGYKEPMSLMMTYNGESAIGLGISNISGGNVVNM
GDAVKARLAELENQRPIGMELNVVSMQSDSVKASVANFVDNLIAAVVIVFVVLLLFMGVR
SGVIIGFVLLLTVSGTLIIMLMDDIAMQRISLGALIIALGMLVDNAIVVTDGVLVKLQQG
EEREKAISEVVNATVWPLLGGTVVGILAFSAIGLSPSDMGEYAGSLFWVILYSMLLSWVF
SVTITPLLCHQFLQVKQQAAGQSEGKVLGAYRSMLMWVLGNRILTGLGLIGLLALALFGM
RLVPPGFMPESQRPQFVVDVYLPQGTDINYTHTVVGRISDEVAKEAAVTGITSFTGGGGL
RFMLTYSPEPRNPAYGQLLIDVDDYQNIAALVVKLQQQLSENYPDASIKVWKFMLGRGGG
KKIEAGFSGPDPRVLRELAEQAKALMLQNPQLIAVQDDWRQQVPVLVPKYDQAVVQQLGL
TSVELNQALTQMLSGTTIGSYREGDDLIPLVVRAPESERRFERAIESLQVYSPVAGRQVP
LSEMTSDIAVEWQDAIVRRIDRQPTILVQADPAPGVLTNEAFNRVRPEIEAIALPPGYRL
TWYGEYKASNDANEGLASSAPFGFAAMILAVVFMFNALRQPLVIWLTVPLAVIGVVVGLV
LFNTAFEFMAILGFLSLIGMMVKNAIVLVDQADSDIRAGAAPLDGLVQASVSRARPVVLG
ALTTILGVAPLIMDPFFKSMAVTIMFGLLFATALTLIVIPLLYAALLRVPAPTR