Protein Info for Sama_1597 in Shewanella amazonensis SB2B

Annotation: hypothetical protein (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1042 signal peptide" amino acids 1 to 42 (42 residues), see Phobius details transmembrane" amino acids 712 to 734 (23 residues), see Phobius details amino acids 752 to 771 (20 residues), see Phobius details amino acids 784 to 804 (21 residues), see Phobius details amino acids 816 to 833 (18 residues), see Phobius details amino acids 839 to 861 (23 residues), see Phobius details amino acids 881 to 899 (19 residues), see Phobius details PF12969: DUF3857" amino acids 112 to 279 (168 residues), 126.5 bits, see alignment E=1.2e-40 PF01841: Transglut_core" amino acids 326 to 403 (78 residues), 26.3 bits, see alignment 8.1e-10

Best Hits

KEGG orthology group: None (inferred from 100% identity to saz:Sama_1597)

Predicted SEED Role

"Transglutaminase-like enzyme"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A1S5Z8 at UniProt or InterPro

Protein Sequence (1042 amino acids)

>Sama_1597 hypothetical protein (RefSeq) (Shewanella amazonensis SB2B)
MLLPILMTLCPQLASVKRQLNMILLPGTLCLIALLSCYASALQAEELHPSLARISLDSEW
RSGAYQSQGVDYTPAASWVDPLDLMVPETMPDDQIRDGLYNLVVDNQYKVDADGKKVQFS
HYADVVTAPKGLESVSQIQIEFDPNYQRLQLHSIWVHRAGELIDKSLDADFQLARSQNTD
DLMYDGSMVATWVLKDIRVGDILEYSYSRLGSNPVFEGRFFGARSLQWSVPVARQQLRIL
WGKPKPLNIKVENSELQFTSTRLGTQTDYRLQVEHMPTITASSDAAPWYNPFAKAYFSET
NSWKQVVDWGLPLFSRQQQVNEDITMLARQITAKHDSKAEQLVAALSLVQENVRYLGLEM
GSNSHFPSAAGDTLSRRYGDCKDKAVLLVTLLGELGVEASPALVNTDTGKMLPAMLPSAD
RFNHAIVRASLNGNNYWLDPTLMDQGDALEHLYQPDYGFALVLSEDSQELVSMASGASGS
RIRFTEEYDFSEGISGVGKANISTLYQGDEARRMRGRIASEGLKALSEQYAGYYGKQFKG
LEAIRPLDVLDDKATGEVRLEEAYHLPAPWQADDDGGYTVYVYESQISPYLTLPQGHGRR
ELALKHPLQIEGTIRLKFRANDWQFDAAVREESNPFFDFHYSVAFDKESNLLTLAYRYQS
NTDRVPADRVDEYIAALKKVADTDSYGIIDYNSEVKDAVTQEADASDDDTNMALIVLSAG
FVALCAIGFAMASWLIDDGHKASSRYYPVSPLKALLLSLLTFGLYPCYWAYKNWQYVQNE
LEPGIWPMARAIFAPLWYYHLYLSLANSGDEDKRRWLIPGWLAVLFMILYIGVSATKKLH
GMTVLSLLVPALVILPLITYINRLNGHNEAYVYNSRWRWRHWLLTVATLPLLLFVLAQEA
GFTASDRVVAGSDLWQRDIKFMKRKAIIAANENPVLFYSDDWLSNQSDGNGFTDARIFSY
WREDGVFYQETVPFEAVKNIEVNFAKGDELTTTITVYRDDGSHFLLFAATEARKDRQFVR
ELLERWRRIRPQGSDNNGEQEQ