Protein Info for Sama_1562 in Shewanella amazonensis SB2B

Annotation: ferrichrome-binding protein (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 167 PF13302: Acetyltransf_3" amino acids 37 to 150 (114 residues), 66.8 bits, see alignment E=6.9e-22 PF00583: Acetyltransf_1" amino acids 57 to 149 (93 residues), 47.3 bits, see alignment E=4.9e-16 PF13508: Acetyltransf_7" amino acids 77 to 150 (74 residues), 29.1 bits, see alignment E=2.2e-10 PF08445: FR47" amino acids 100 to 153 (54 residues), 23.1 bits, see alignment E=1.2e-08

Best Hits

KEGG orthology group: None (inferred from 100% identity to saz:Sama_1562)

Predicted SEED Role

"Ferrichrome-binding protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A1S5W3 at UniProt or InterPro

Protein Sequence (167 amino acids)

>Sama_1562 ferrichrome-binding protein (RefSeq) (Shewanella amazonensis SB2B)
MTISFETQRLSVIEITNGVAWSERSDLLERVPAILTPAVVENLPPYFHGVASPGSASMWL
ERTLRDSRLLQINAQTREIIGFLFIHVENEHHAHIGYLLAQEYWGKGLATELLQGFIRAA
ANKESWLTLVGGVEQTNTASAKLLEKLGFTAQSQGENSQVFYEYRLS