Protein Info for Sama_1553 in Shewanella amazonensis SB2B

Annotation: hypothetical protein (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 493 transmembrane" amino acids 12 to 35 (24 residues), see Phobius details PF12146: Hydrolase_4" amino acids 124 to 255 (132 residues), 34.2 bits, see alignment E=1.7e-12 PF12697: Abhydrolase_6" amino acids 124 to 273 (150 residues), 49.2 bits, see alignment E=1.1e-16

Best Hits

KEGG orthology group: None (inferred from 100% identity to saz:Sama_1553)

Predicted SEED Role

"Putative membrane protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A1S5V4 at UniProt or InterPro

Protein Sequence (493 amino acids)

>Sama_1553 hypothetical protein (RefSeq) (Shewanella amazonensis SB2B)
MKTLLLSTSKHFLIAVVYGTLGVCITALGFGVWFLNSRPDLDIWHTTDLQHRFTRQSEVR
DFAGYLALEAALKQEIGTRIYAKTAGLDSPVNRYVKGSLSAPSHWSQDWNWSYEWPNADA
DYGVLLLHGMSDSPYALSNLAEDLKPNAHVLGLRLPGHGTLPSGLVRLEWQDMSAAVAIA
IRHLKAVLGERPLYIVGFSTGAALALHHELERIGAGKTPDSEAMVFLSPAIGLAPVARGA
YWQARLGEWLGLEKLAWNALGSEYDPFKYVSFAVNAGDVVYRLAQENQRQLQLLSPSQKA
LLPTLLTFQSMADDTVSSRAVVESLYLKLTESRHQLVLYDVNRSPINQPLTQWDPRPELE
RLYRSPGMQVRVGVVQNRTLVDGSHPLSVEFKPLVPQGEAIPLSQSWPMNVYSLSHVALP
FSKSDSLYGQGVVPHKDRIQIGAAASRGERGIFAVSADEMLRQKWNPFYEFQLSIINDLF
NDPLRSSEVGKAP