Protein Info for Sama_1545 in Shewanella amazonensis SB2B

Annotation: binding-protein-dependent transport systems inner membrane component (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 499 signal peptide" amino acids 1 to 35 (35 residues), see Phobius details transmembrane" amino acids 63 to 87 (25 residues), see Phobius details amino acids 106 to 131 (26 residues), see Phobius details amino acids 187 to 206 (20 residues), see Phobius details amino acids 218 to 236 (19 residues), see Phobius details amino acids 243 to 267 (25 residues), see Phobius details amino acids 281 to 302 (22 residues), see Phobius details amino acids 309 to 335 (27 residues), see Phobius details amino acids 346 to 394 (49 residues), see Phobius details amino acids 413 to 431 (19 residues), see Phobius details amino acids 436 to 455 (20 residues), see Phobius details amino acids 462 to 485 (24 residues), see Phobius details

Best Hits

KEGG orthology group: K02042, phosphonate transport system permease protein (inferred from 100% identity to saz:Sama_1545)

Predicted SEED Role

"Phosphonate ABC transporter permease protein phnE (TC 3.A.1.9.1)" in subsystem ABC transporter alkylphosphonate (TC 3.A.1.9.1) (TC 3.A.1.9.1)

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A1S5U6 at UniProt or InterPro

Protein Sequence (499 amino acids)

>Sama_1545 binding-protein-dependent transport systems inner membrane component (RefSeq) (Shewanella amazonensis SB2B)
MLNLAFIGRWQRLTLGLWLLCFCAFWLADTEVIALEPWNELGRMFAGFITPDFFATEHLI
DALWQTVSFTLLGISLGLVIGVPLSLVYHQPLVAAGCAFIRAIHEIFWALLFLQLFGLSP
VTGVLALALPYGTTFARVFHDILCRAPKDTADSLPGGTDPLSQWLYGKIAHVLPELLAYT
RYRFECALRSSAVLGFVGMPTLGFHLESAFKQGNYSEGAALLLLFIFLIGTLPYWCKRWL
LPFYMLAAVYFLPPVAGLDGSLIWRFISEDIWPHGLRQWQLGDLGLGAALVDTLGWLQGL
ILSQALPGIMATLVLALGALGLTHLLVCFLLPLAYKPLSGRLVSGASTLSLLLMRSIPEY
ILAFVFMLLLGPSMLPAMLALALHNAGLILFLTARSANRMPPRDEDKGGLDGFGYRVLPA
IYPGMMALLFYRFEVILRETAILGMLGVATLGFYIDSNFSEIRFAGAMVLMGITAMVNVL
VDAAARRALGQGRHKTERC