Protein Info for Sama_1383 in Shewanella amazonensis SB2B

Annotation: prolyl oligopeptidase family protein (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 686 signal peptide" amino acids 1 to 25 (25 residues), see Phobius details PF20434: BD-FAE" amino acids 435 to 618 (184 residues), 36.3 bits, see alignment E=1.4e-12 PF02129: Peptidase_S15" amino acids 452 to 552 (101 residues), 24.3 bits, see alignment E=7e-09 PF00326: Peptidase_S9" amino acids 454 to 659 (206 residues), 160.4 bits, see alignment E=1.4e-50 PF01738: DLH" amino acids 494 to 637 (144 residues), 25.2 bits, see alignment E=3.5e-09

Best Hits

KEGG orthology group: None (inferred from 100% identity to saz:Sama_1383)

Predicted SEED Role

"Gll1470 protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A1S5D4 at UniProt or InterPro

Protein Sequence (686 amino acids)

>Sama_1383 prolyl oligopeptidase family protein (RefSeq) (Shewanella amazonensis SB2B)
MRLGIGHRVAAICLMTLALLGCEPGQESVLPQETDNEPMAARYGTWISPLTAEDVYASSD
ELIELRAVGDLMYFSEFDGKSGNTGIKRLEVDGSVTQVVPAEFNVGSRVHEYGGGDFLGI
GQSLFATGKGDQLFYRFAPNQAPLALTPNGTRHGDCISYPKGSRIICVREDHRQQGSPAA
SLVTINLNFAGEGDTFVAGHDFISSPSINSDNTQLAWLTWEHPAMPWDNTRLWLGELDRK
GRLHSSRVVAGDGGNVAVTQPSFGPDGRLYFIADYDDWWNLYRLGDDGKPERLYQKNADF
AGPAWRLGERTYAFESDNSLIASYVHNGEAGLIRLDLQTGHAEDIAVDFGEIKQLTGGKD
AVYFIGSKVTTEKGIYRVSGRGVELVYAPRLMVLDPRFISRAQSISFATADNMRAWGYFY
WPRNPAFKGLSDTRPPLLVKLHGGPTAKANLAYRGDIQYWTSRGFAVLDLNFRGSSGFGR
AYRQSLYGNWGKADVEDAVNAARFLVKKGWVNGDEMAITGASAGGLTALLVLAYDDTFKA
AVSRAGISDIEQLAGETHKFEKTYLDQLIGPLATHRTLYRERSPLYQLDRLKEPLLLLQG
LQDTVVLPNQALTIYEALEKNQIPAALLTFADENHNHWKNANLVKALEYELGFYGQVFGF
KVADEVPSLDLQLRTPLEVSQPPLSK