Protein Info for Sama_1343 in Shewanella amazonensis SB2B

Annotation: hypothetical protein (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 138 transmembrane" amino acids 9 to 29 (21 residues), see Phobius details amino acids 35 to 56 (22 residues), see Phobius details amino acids 71 to 89 (19 residues), see Phobius details amino acids 99 to 121 (23 residues), see Phobius details

Best Hits

KEGG orthology group: None (inferred from 100% identity to saz:Sama_1343)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A1S594 at UniProt or InterPro

Protein Sequence (138 amino acids)

>Sama_1343 hypothetical protein (RefSeq) (Shewanella amazonensis SB2B)
MNQDAPKIFVYSLLLPLLWISASFLILYFSLNVDLGVVGVVLVIYMSLIAICWLFSKRFN
RDFNPNEKIRLTIYFLFWATLIRIISIYSVSETVSSDALLLAFLALFVVDCLIIIPTVYS
VSKRINGFFLRNNLPKNA