Protein Info for Sama_1280 in Shewanella amazonensis SB2B

Annotation: carbon starvation protein (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 477 signal peptide" amino acids 1 to 20 (20 residues), see Phobius details transmembrane" amino acids 74 to 95 (22 residues), see Phobius details amino acids 126 to 148 (23 residues), see Phobius details amino acids 155 to 175 (21 residues), see Phobius details amino acids 184 to 205 (22 residues), see Phobius details amino acids 230 to 248 (19 residues), see Phobius details amino acids 268 to 292 (25 residues), see Phobius details amino acids 314 to 335 (22 residues), see Phobius details amino acids 363 to 384 (22 residues), see Phobius details amino acids 390 to 408 (19 residues), see Phobius details amino acids 415 to 434 (20 residues), see Phobius details amino acids 442 to 464 (23 residues), see Phobius details PF02554: CstA" amino acids 4 to 146 (143 residues), 121.3 bits, see alignment E=2.7e-39 amino acids 155 to 285 (131 residues), 65.3 bits, see alignment E=2.4e-22 amino acids 291 to 429 (139 residues), 31.4 bits, see alignment E=4.4e-12

Best Hits

KEGG orthology group: None (inferred from 100% identity to saz:Sama_1280)

Predicted SEED Role

"Carbon starvation protein A"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A1S531 at UniProt or InterPro

Protein Sequence (477 amino acids)

>Sama_1280 carbon starvation protein (RefSeq) (Shewanella amazonensis SB2B)
MTWFLLCVGLLLVGYFVYGAFVEKVFGINAKRQTPAFAQTDGVDYVPMSKGKVYLIQLLN
IAGVGPIFGPILGALYGPAAMLWIVIGCIFAGAVHDYFSGMLSVRNGGQSVPNLAGKYLG
KSAKHFMNVFATILLLLVGVVFISAPAGLLGKLTGLSVSLFVGIIFVYYLIATIVPVDKI
IGRLYPFFGALLLFMSVGLTVALIVSSEHSLLPGVEASDFLTNLNPNDMPLWPALFITIA
CGAVSGFHATQSPLMARCMENETNGRFVFYGAMIGEGIIALIWCAIALSFFGGVEGLATG
MAGNPANVVYEASTGLLGAVGGFMAVLGVIILPITSGDTAFRSARLILAEFFNMPQTQLP
KRLMLAIPLFVLGGILTQVDFGVIWRYFGVANQATAVLMLWTASAYLLRHNKLHWICTIP
AMFMTSVVVTFLLNSATLGAGLPMTISTVVGVLVAFAVATLLVIKIKGKSVELAEEA