Protein Info for Sama_1268 in Shewanella amazonensis SB2B

Annotation: exonuclease SbcC, putative (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1020 signal peptide" amino acids 1 to 18 (18 residues), see Phobius details PF13476: AAA_23" amino acids 6 to 211 (206 residues), 71.8 bits, see alignment E=1.3e-23 PF13558: SbcC_Walker_B" amino acids 918 to 977 (60 residues), 33.6 bits, see alignment 3.7e-12

Best Hits

KEGG orthology group: K03546, exonuclease SbcC (inferred from 100% identity to saz:Sama_1268)

Predicted SEED Role

"Exonuclease SbcC" in subsystem DNA repair, bacterial

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A1S519 at UniProt or InterPro

Protein Sequence (1020 amino acids)

>Sama_1268 exonuclease SbcC, putative (RefSeq) (Shewanella amazonensis SB2B)
MKPLTLAITAFGPFVDTQTLDFRALGEWPLFLINGPTGAGKTTILDAICFALYGKTTGNE
REGTQMRCDAAPDDVLTEVTFEFGLGDKVYRVKRMPEQQRAKKSGEGFTVQKSDALLERI
EGEHTTPLAAGKVTEVTAQIEDLLGLEVEQFRQVMVLPQGQFRKLLLADSKEREAIFGQL
FQTGIYKRIEDSLKQKALELKARAKELEARRAGILETAGAESVEALNDAISALAPELASA
TKAKQAAEAKLTAAKAQREAAEAKLREFSALNDTRLRLEAENAKAESMAALGMQLERAAL
AESLAGTWQAWEERAKERKSAEAAAVMAAEAAKQAELSYANAKTAAAALPELEARRHQLK
NEAERLAEWRPRMHRLSALNEAITGLGQTLNALDANLAHVRSRLGDTQGRIAMLTQQRRD
LSALASTAGSLEATLVQQTHVFERHQQLIEKERQAQKLATELSRLEADGRQAKANQDNLT
RARELLELAWHQGQAAMLAARLLPGAPCPVCGSVEHPSPAHHEGALPGDDELAAAREAEQ
QAREMLSRARSEYKAQKQRLEVMQQELANDAAALGDALATSLEQKQYALGQRREACQNAK
AAQQSLQALEHELEQLDNTQKQLLADIDGLQRQRDQHSGELQKACGEQESLAGAMPELCQ
RLGNEQAFDAHLAALSQDIEALSGQMEKLQTQLSDAQIRQTQCNERRAALQQTLSEARSR
EAAAKARFDTELAAKGFNDVVSFNQARMTADDMGDAKSRIATWQQQLAGLKERMAAQQES
LGDVLPPDLTELAALETAAQDGFNQCNQQWQVLNDTQVMYSRARAQLGTEAEVAARLDEE
YAVVGTLSDAASGMTGARISLQRFVLGVLLDDVLIEASERLHRMSKGRYRLLRREDKAKG
NRASGLDLEVEDAYTGKLRPVATLSGGESFMAALSLALGLSDVVQAYAGGIKLDTLFIDE
GFGSLDQDSLELAVRTLVDLQSSGRMIGVISHVTEMKEQIQTRVDIHKDTVGSQIRLTVA