Protein Info for Sama_1241 in Shewanella amazonensis SB2B

Annotation: hypothetical protein (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 362 transmembrane" amino acids 72 to 92 (21 residues), see Phobius details amino acids 100 to 121 (22 residues), see Phobius details amino acids 211 to 230 (20 residues), see Phobius details TIGR01620: TIGR01620 family protein" amino acids 80 to 338 (259 residues), 219.8 bits, see alignment E=2.3e-69 PF05128: DUF697" amino acids 179 to 338 (160 residues), 185.3 bits, see alignment E=3.6e-59

Best Hits

KEGG orthology group: K08990, putative membrane protein (inferred from 100% identity to saz:Sama_1241)

Predicted SEED Role

"Membrane protein YcjF"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A1S4Z2 at UniProt or InterPro

Protein Sequence (362 amino acids)

>Sama_1241 hypothetical protein (RefSeq) (Shewanella amazonensis SB2B)
MTEIMKDETPLAPARRFESERPTDDALAGTQRFAVETEVRSLDETELEQALSPLDAHITL
QGLKGRRWSPLAKWALTGLGVLVVTETALGLMDAYRQSPWLFGLYGVVLGLVLTWGLGAA
WREYLLLKRLKATDDAREQGARIRESVQIGEADAFINSLSSKAPADALSKFKTLVRDEHN
DAEKLTLYEECVLTAQDEAAKRKVSRYAMESAALLAASPLAVLDMGIILWRNQKMIRDVA
DCYGVELGYWSRIRLIRAILVNIFYAGTTELVTDLGSQLLSVEMTGKLSARLAQGLGGGL
LTARLGYQAMALCRPLTFKTEQKPKLSRIHQQLLVELKSLFSSALNGQVDSRLRRNKDFT
NG