Protein Info for Sama_1217 in Shewanella amazonensis SB2B

Annotation: hypothetical protein (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 198 transmembrane" amino acids 33 to 54 (22 residues), see Phobius details amino acids 70 to 95 (26 residues), see Phobius details amino acids 107 to 126 (20 residues), see Phobius details amino acids 131 to 152 (22 residues), see Phobius details amino acids 164 to 191 (28 residues), see Phobius details PF04893: Yip1" amino acids 8 to 181 (174 residues), 138.7 bits, see alignment E=9.5e-45

Best Hits

Swiss-Prot: 35% identical to YOHC_ECOLI: Inner membrane protein YohC (yohC) from Escherichia coli (strain K12)

KEGG orthology group: None (inferred from 100% identity to saz:Sama_1217)

Predicted SEED Role

"FIG01345364: inner membrane protein Yip1"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A1S4W8 at UniProt or InterPro

Protein Sequence (198 amino acids)

>Sama_1217 hypothetical protein (RefSeq) (Shewanella amazonensis SB2B)
MVLNHLLGLYTHPKEEWHTIEKNHEALKSSMSHLLLIALIPPICSYFAMAHIGWNPGAGE
PLFLTSQSAIYMSVGMYFGLIAGVFGLAYLAHWMAITFDAKPDFTQALELATYTATPLFM
VGLSALYPVLWFMMVVGLIGLAYSVYLLYTGVPIIMNIPEEKGFIYASSVVTAGLVLLVA
LMAGSVILWSLGFGPMLQ