Protein Info for Sama_1188 in Shewanella amazonensis SB2B

Annotation: hypothetical protein (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1186 transmembrane" amino acids 18 to 35 (18 residues), see Phobius details amino acids 54 to 76 (23 residues), see Phobius details amino acids 103 to 125 (23 residues), see Phobius details amino acids 144 to 167 (24 residues), see Phobius details amino acids 175 to 194 (20 residues), see Phobius details amino acids 242 to 259 (18 residues), see Phobius details amino acids 310 to 333 (24 residues), see Phobius details amino acids 353 to 374 (22 residues), see Phobius details amino acids 401 to 425 (25 residues), see Phobius details amino acids 437 to 460 (24 residues), see Phobius details amino acids 470 to 488 (19 residues), see Phobius details amino acids 517 to 537 (21 residues), see Phobius details amino acids 558 to 580 (23 residues), see Phobius details PF12730: ABC2_membrane_4" amino acids 336 to 467 (132 residues), 33.6 bits, see alignment E=3.8e-12 PF01433: Peptidase_M1" amino acids 861 to 1058 (198 residues), 46 bits, see alignment E=5.1e-16

Best Hits

KEGG orthology group: None (inferred from 100% identity to saz:Sama_1188)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A1S4T9 at UniProt or InterPro

Protein Sequence (1186 amino acids)

>Sama_1188 hypothetical protein (RefSeq) (Shewanella amazonensis SB2B)
MFLHTLSFEWRYYLRQPSYYVVGMLLFLVCFFATATDNVQIGSGGEVLKNSPFAIGQTLL
ITGVIAMFAVVNFVGSTAVRNQQCLMEELLYVKPLSPIGYQLGRFAGSALVVMTLFTLAP
LGHLLGSLMPWVDSSRFGEISLWFYLKPMLLLVMPSLLFLSALFYAMAQKFRSMMALYLT
AVAVFILYGLAGQLASQPQYREIAALLDPFALRTYSQVARYWTIAEKNTISMGLEGLMLQ
NRVIWLSITAFILAISGLHRQPSLTRRTEGKKQRAYKVPVMPPLSALVRTPNISGRAQFW
TRVRFEVKQVLFTAPFYILGALSIFNLLGPMIAGDLNWYGTSNWPLTQDMVDLIVGSTGL
LMVIILVFYCGEIVWRERSTGMGDIIDSLPVSNRVFLSSKFVALSLVMVILYLIAMLTTI
CFQLIKGQMNLELSQYAIRLGFMILLPLMMSAVLAFFFQVLAPNKYAGMGLYVGYYVLSL
ILASWGFGHSLNNFASSPTLPYSDMNGYGWSLQSHALYMLYWGAFSVLLFLLAFGLYRRG
PEVGLKHRIGLLKYQLGSGGRVLAFASVAVFAGMGAYLFYQTTVVNDYRIPDEMTDSQAD
YEKRYRQYADAPVLSPVSVKGHFDIYPGERRLKARVEMRWQNRSGEPISRMLVSLPEHTD
RASLKFDIPGARLADEDDSLPVAWLVFDTPIAVGAEIAGEISLVRENTGIAENNFDLTLV
ENGTFINNFELLPVFGYQSDAELLDRHEREKRGLPPKDRANKLEDKRFHQVNFFGPQGSF
VDFEATVSTAGDQTALVPGYLTKAWQENGRNFFHYKMDSPMVNFFAIVSGRFEVKKEQYK
GINIEVYYHPDHPWNVERMVESVRDSIDYFTQAFGPYQHRQLRIMEFPGYRSFAQSFANT
VPYSERIGFITDLRDPDKIDPVYYVTAHEVAHQWWGHQVGAADVQGSAVISESLSQYAAL
MVMEKKYGAHMLRKFLRYELDRYLRGRGGERIGEMPLLRSENQQYIHYQKGSVVMMAIKD
MVGEEKLNANLAAFLERYRYRTDPFPTTLDLLDYLKQGLDDEELAFVDSAFRDIKLYDLR
LTNAKVTELENGKVRVDLDIHAGLLKADNEGKEQEEIFNERVDIGLFAADPDSIDSEEQV
LLLEKHPLKSGDNQLSFELDKAPSFVGVDPFVKLVDRDSKDNIFKL