Protein Info for Sama_0948 in Shewanella amazonensis SB2B

Annotation: multiple antibiotic resistance (MarC)-related protein (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 441 transmembrane" amino acids 20 to 41 (22 residues), see Phobius details amino acids 53 to 73 (21 residues), see Phobius details amino acids 85 to 104 (20 residues), see Phobius details amino acids 110 to 130 (21 residues), see Phobius details amino acids 149 to 171 (23 residues), see Phobius details amino acids 203 to 222 (20 residues), see Phobius details amino acids 246 to 265 (20 residues), see Phobius details amino acids 281 to 302 (22 residues), see Phobius details amino acids 311 to 330 (20 residues), see Phobius details amino acids 351 to 374 (24 residues), see Phobius details amino acids 386 to 403 (18 residues), see Phobius details amino acids 415 to 432 (18 residues), see Phobius details PF07690: MFS_1" amino acids 24 to 398 (375 residues), 61.4 bits, see alignment E=3.7e-21 TIGR01272: glucose/galactose transporter WARNING" amino acids 100 to 430 (331 residues), 218.7 bits, see alignment E=6.6e-69

Best Hits

KEGG orthology group: None (inferred from 100% identity to saz:Sama_0948)

Predicted SEED Role

"N-acetyl glucosamine transporter, NagP" in subsystem Chitin and N-acetylglucosamine utilization

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A1S449 at UniProt or InterPro

Protein Sequence (441 amino acids)

>Sama_0948 multiple antibiotic resistance (MarC)-related protein (RefSeq) (Shewanella amazonensis SB2B)
MNMTVASEAQVSRRSSVLPMTIIGILFFIFGFVTWLNGSLIPFLKVICELNEFQALFVTF
AFYIAYTVMALPMSSILRRTGYRNGMAIGLGIMVVGSLAFIPAAYSANFLLFLGALFILG
TGLTILQTASNPYVVHIGPKESAAMRISIMGIINKLAGVVVPLLFTALVLSGLENFDEAH
LSALSDADRAVQITELSSRLVMPYIYMAVALLALIALVKFSGLPELEFEEAESAEGEKGS
ITQFPQVILGAIALFAYVGIEVIAGDTIGLYGQSLGVANFASLTSYTMVFMVIGYAIGVL
CIPRFISQERALLASAIAGGLCVLGAVFGSTESTTLASALWGWMGVPLVPNSVVFVAMMG
LAHALVWPAVWPLALDGLGKFTAQGSALLIMGISGGAILPLLFGKVAHFSGETQLGYWVG
LPCYLFILFYAVKGHKMRSWK