Protein Info for Sama_0810 in Shewanella amazonensis SB2B

Annotation: hypothetical protein (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 317 PF04463: 2-thiour_desulf" amino acids 11 to 151 (141 residues), 134.8 bits, see alignment E=2.3e-43 PF08349: DUF1722" amino acids 194 to 308 (115 residues), 134.9 bits, see alignment E=1.6e-43

Best Hits

KEGG orthology group: None (inferred from 100% identity to saz:Sama_0810)

Predicted SEED Role

"COG1683: Uncharacterized conserved protein / FIG143828: Hypothetical protein YbgA"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A1S3R1 at UniProt or InterPro

Protein Sequence (317 amino acids)

>Sama_0810 hypothetical protein (RefSeq) (Shewanella amazonensis SB2B)
MHKFNPDRIQIGISACLLGEQVRFDGGHKNSAYCQQELKPHFDFVPVCPEMAIGLGAPRK
SIRQVRIEGEIRVRSADGSIDVTEQLQSFCNNKADGLGFLGGYLFCSKSPTCGMERVPVY
KADGSGGFKEGVGVFAAALMKRFPHLPVEEEGRLHDLVIRENFFTRVYAYHDWHCMRLKG
LTRKALTDFHARYKYLLLSHSPAIYRTLGPLLAGDGELEAVADSYFDGFMTALRHKASRR
NHTSALQHIQGYFKKFLSGSQKAELSDAILAYRQGVQPLLVPITLIRHYLREHPNDYIAA
QVYLNPHPDSLRLRYAY