Protein Info for Sama_0592 in Shewanella amazonensis SB2B

Updated annotation (from data): smc-like chromosome partitioning protein (DUF3584)
Rationale: Conserved phenotypes: important for motility and cisplatin resistance. DUF3584 is distantly related to smc proteins.
Original annotation: hypothetical protein (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1226 transmembrane" amino acids 1121 to 1138 (18 residues), see Phobius details PF12128: DUF3584" amino acids 8 to 1198 (1191 residues), 1831.3 bits, see alignment E=0

Best Hits

KEGG orthology group: None (inferred from 100% identity to saz:Sama_0592)

Predicted SEED Role

"FIG020374: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A1S344 at UniProt or InterPro

Protein Sequence (1226 amino acids)

>Sama_0592 smc-like chromosome partitioning protein (DUF3584) (Shewanella amazonensis SB2B)
MSSLQRIVLIDTHLPGVVELALDGHTNICGTNASGKTTLQRLVPVFYGEYPSRVVPSTRD
SFERWYLPHDSSYIIYEYRRGDGMLYQAVLSSNGDGKGISYRFIAKGFELDDYVKARNGD
ALVCHTAAELGREMKRAGIAHTNLLNTREYRAIIQNDRTLLSSGTNRVELRSYARQFALC
DAEHTLRHIEKLAKAVHSKEGKMETVKSMIAAILEEDGVNPPTSRINPQQVENWIRECQL
IAGFEEIRPEFDKLEQEFNQLLSAELRLAGLHKGYKDDEVLEAERQERCQTASKEYNFRL
RQLDDEWKEKRDELNQEISAARGDVSKFEHELEVIEDQHGAFLDADIETAKGDLEQLPLW
RTDLENLSERHKLLTDKHQDVEAAYNARRSKIVEQLNRDLEVLDQDLDKQRDARERQAAA
ARSDLEKLEQFWRDQLEAGKNRFREEEYELKLAASEEKLRQDAVTYTEEEKLNLAVFDER
IERADEEQEASNANVERLALEERRLRSRRDQASEALRLASIRVSERQNALDELKTMLFPQ
SHTLLEFLRKEAPGWEEHLGKVIAPELLHRTDLHPFNASSGADGNSLFGIGLDLKALDIP
EYAQSEQELRSRLAKAEEALGSAREVQEAAEEQLVTINGELEKLSRELTFARTAFKNARE
DLRRLFDEKRAEQDRVNKALAERKQLAGKRLVTIEHQLKQLGRDHQDWLEETKEESLEAR
MEKNAYWQEVVGALDAQIASVKTGIESRRANAKAETKACEQWYKNELKSRGVDEDKIVGL
KADIRTLERKIADAEGRRADVLRYEDWYQHTWLSRKPRLAEELAKVRRAQSELEQQLARL
SAEVKTQRSELESGRKASDAAQVEASENLTKLRSLLRKLADLKLAPTDDEAQGSIGERLR
QGEELLLKRDYLVGSVKQYVEHFDTVIAAKSGSGLAETWERAREEATSINDKGIRILDYR
KLVPSLEQLLNVMVPQSIMALREQGRIFGVDLTAFYDVLADIDRRIASQSARITREVGEE
LFLDGVSESAVRIRSRISELEFWPELEVFVAAFRRWKSDGFAGLPDEHYTNSMRRALDII
GKAALSGGIAKLLEIELRLREGNSDLIIRTDRQLNESSSHGMAYLILCKFLLAFTRLLRG
SAQVTVHWPIDELGTLHHNNVKKIFDACENNNISVLGAFPNPESEVLSLFKNRYIINKQT
RKLQVVKPKSNPIADKLASRISREAV