Protein Info for Sama_0522 in Shewanella amazonensis SB2B

Annotation: response regulator receiver protein (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 223 PF00072: Response_reg" amino acids 6 to 118 (113 residues), 73.4 bits, see alignment E=1.6e-24 PF00196: GerE" amino acids 153 to 204 (52 residues), 60.4 bits, see alignment E=9.8e-21

Best Hits

Swiss-Prot: 43% identical to AGMR_PSEPU: Glycerol metabolism activator (agmR) from Pseudomonas putida

KEGG orthology group: None (inferred from 100% identity to saz:Sama_0522)

Predicted SEED Role

"Transcriptional regulator, LuxR family"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A1S2X6 at UniProt or InterPro

Protein Sequence (223 amino acids)

>Sama_0522 response regulator receiver protein (RefSeq) (Shewanella amazonensis SB2B)
MSQIKVAIADDHPLFRAALTQAVLKNVNTAEVLEAENFQELIRVIESHPDIELVFLDLHM
PGNEGFTGLTLLQNHFPDIVVIMVSSDDQPDIIRKAINLGASAFIPKSANLNQIADAIGT
VLDGEVWLPDNTDINVDQQTAAEHQRLAKQLAQLTPQQYTVLASIANGQLNKQIAYDLNI
KETTVKKHVSAILLKLEVYNRTQAGLVFQQLMITSSDKQTATA