Protein Info for Sama_0514 in Shewanella amazonensis SB2B

Annotation: excinuclease ABC, A subunit (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 900 942 TIGR00630: excinuclease ABC subunit A" amino acids 3 to 925 (923 residues), 1487.8 bits, see alignment E=0 PF17760: UvrA_inter" amino acids 130 to 237 (108 residues), 129.6 bits, see alignment E=1.3e-41 PF17755: UvrA_DNA-bind" amino acids 290 to 399 (110 residues), 125.5 bits, see alignment E=3.6e-40

Best Hits

Swiss-Prot: 81% identical to UVRA_SHIFL: UvrABC system protein A (uvrA) from Shigella flexneri

KEGG orthology group: K03701, excinuclease ABC subunit A (inferred from 78% identity to aat:D11S_0457)

MetaCyc: 81% identical to UvrABC excision nuclease subunit A (Escherichia coli K-12 substr. MG1655)
3.1.25.-

Predicted SEED Role

"Excinuclease ABC subunit A" in subsystem DNA repair, UvrABC system

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A1S2W8 at UniProt or InterPro

Protein Sequence (942 amino acids)

>Sama_0514 excinuclease ABC, A subunit (RefSeq) (Shewanella amazonensis SB2B)
MDKIEIRGARTHNLKNINLTIPRDKLIVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAY
ARQFLSLMEKPDVDHIEGLSPAISIEQKSTSHNPRSTVGTITEVYDYLRLLFARVGEPRC
PTHGQPLAAQTVSQMVDKVLERPEGEKLMLLAPVVKARKGEHVKLLDSLSAQGYIRARID
GEVCDLSDPPTLDLHVKHTIEVVVDRFKVKDDMQQRLAESFETTLELSGGIAVVASMEEG
AAEEMIFSANFACPHCGYSMAELEPRIFSFNNPAGACQTCDGLGVQQFFDPERVIVSGEL
SLAGGAVRGWDRRNFYYFQMLKSLAEHYEFDVEAPFSELTAKVQKIVLYGSGKEEVAFRY
VNDRGDVVVRKHPFEGILNNMDRRYRETESNTVREELAKYISNQACSSCGGSRLREEARH
VFIEDLNLPTLTHWSIGEAMDYFNKLEFEGQKAQIAEKILKEVRDRLGFLVNVGLNYLSL
ARSAETLSGGEAQRIRLASQIGAGLVGVMYVLDEPSIGLHQRDNERLLNTLTHLRDLGNT
VIVVEHDEDAIRMADHIIDIGPGAGVHGGEVICDGDLAAITACEHSVTGQYISGKRKIQV
DGGRTPINPEQLIELRGARGNNLKNVDLSIPVGLFTCVTGVSGSGKSTLINDTFFKIAHK
ALNGATVDEPAPYTSITGLEQCDKVVDIDQSPIGRTPRSNPATYTGIFTPIRELFAGTQE
SRTRGYQVGRFSFNVKGGRCEACQGDGLIKVEMHFLPDVYVPCDSCKGKRYNRETLEVKY
KGKNIHEVLQMTVEDARTFFDAVPAIARKLQTLMDVGLSYIRLGQSATTLSGGEAQRVKL
AKELSKRDTGKTLYILDEPTTGLHFADIQLLLDVLHRLKSHGNTIVVIEHNLDVIKTADW
IVDLGPEGGSGGGTILVAGTPEDVAEHPTSHTARFLKPLLQR