Protein Info for Sama_0513 in Shewanella amazonensis SB2B

Annotation: peptidase M28 (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 341 signal peptide" amino acids 1 to 26 (26 residues), see Phobius details PF04389: Peptidase_M28" amino acids 123 to 326 (204 residues), 122.2 bits, see alignment E=1.1e-39

Best Hits

KEGG orthology group: None (inferred from 100% identity to saz:Sama_0513)

Predicted SEED Role

"Peptidase, M28 family"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A1S2W7 at UniProt or InterPro

Protein Sequence (341 amino acids)

>Sama_0513 peptidase M28 (RefSeq) (Shewanella amazonensis SB2B)
MGQGRLGYRIWGAALLACWLTGCASAPQCRRDLTAEWVSLPEVKQDVVHLASAPLAGRKT
GTEGALLARRYLAVRFGESGLQPVAADFSPMTQERVQQTAEDSHPFFHPFSIDKLFGQRQ
GTNVIGLLPAAKANSRWRVVLAHYDHLGTSGSRYFAGADDNASGVAALLALAKQAAKDPL
RPADLNLLFVATDAEEPGLYGSQALATRLGELGIVPELALNLDMVGHPGSPYAIYMEGSR
KFANADELKALVERNGLCARLSHSRLERDGSAMKVNYLKASDHYPFHKSGVPWLYFGVPP
HPQYHTVDDTPDKLDFNFLAATIEAVYPLLWTTLEPKLPQG