Protein Info for Sama_0507 in Shewanella amazonensis SB2B

Annotation: hypothetical protein (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 349 transmembrane" amino acids 36 to 59 (24 residues), see Phobius details PF13533: Biotin_lipoyl_2" amino acids 72 to 119 (48 residues), 45.6 bits, see alignment 9.7e-16 PF13437: HlyD_3" amino acids 229 to 299 (71 residues), 28.3 bits, see alignment E=4.8e-10

Best Hits

KEGG orthology group: None (inferred from 100% identity to saz:Sama_0507)

Predicted SEED Role

"FIG01057668: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A1S2W1 at UniProt or InterPro

Protein Sequence (349 amino acids)

>Sama_0507 hypothetical protein (RefSeq) (Shewanella amazonensis SB2B)
MKESYGSSDKSQAPTADASLKVSYDNLRRGAYRGRWYLLLALIIAPVLLVIWFVLKPWLF
ILAPGIVTSEPLEMRSPASGVVHAVYQTRGDVVSTGQPLLVLKDPALDAQIQGLERQLTQ
MQQFRDLGAEISAQIGEKIRVAEEGMIRQDELLSQFEKFRAKGVVPTADMAAVLQAHTSA
KMALEQARAELVSELQRQQEARQAGVVTQSRQRMELELSRLKALREQLTIRAPYDARIAD
IQVQVGEQLAVERPLLWLSGRASPVVVAYLEPKYLDYVDLGQQASITLPNGESFNGRIEE
PTELVSKLPKQLSGSFDGEKPVLKVTLTPLEPLSLAVEGVPVEVRFDRF