Protein Info for Sama_0479 in Shewanella amazonensis SB2B

Annotation: hypothetical protein (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 375 transmembrane" amino acids 21 to 41 (21 residues), see Phobius details amino acids 180 to 204 (25 residues), see Phobius details amino acids 227 to 248 (22 residues), see Phobius details amino acids 259 to 281 (23 residues), see Phobius details amino acids 288 to 309 (22 residues), see Phobius details amino acids 346 to 366 (21 residues), see Phobius details PF12698: ABC2_membrane_3" amino acids 17 to 363 (347 residues), 199.2 bits, see alignment E=5.2e-63

Best Hits

KEGG orthology group: K09686, antibiotic transport system permease protein (inferred from 100% identity to saz:Sama_0479)

Predicted SEED Role

"ABC-type multidrug transport system, permease component"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A1S2T3 at UniProt or InterPro

Protein Sequence (375 amino acids)

>Sama_0479 hypothetical protein (RefSeq) (Shewanella amazonensis SB2B)
MKTLLRRELGALWQNPWQLALVSYLPILAMLALWWLFSAALPRQLPVAMVDLDNSSLSRE
LGRHIAASPVISPISFASLPQAEDAMNRAEVYALVVVPHGFSRDLKTGAQPTVDVRYNGQ
FLLVGKLLAANLQQAIADAMKPLAYSKQLAHGANPHQAHINIAPIATQTTALFNRNNNYV
GFLVPPVLIALWQLTAMLVFANALNRELEPSARCDSVGLLPRLGAKLLCYMPLLMLQGLF
IHALLFGYLKLPVAASPLWLIPAMLALLLAVFLIVAVIFLLMQESARVVSFCTALFAPAF
AFMGVTFPVQDMPAAAQYWRLLMPSSHYIDSHIALVSYGVSGMELLGKSFTFMPFLLLLL
PIALLARKGLKEAQS