Protein Info for Sama_0472 in Shewanella amazonensis SB2B

Annotation: membrane protein (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1400 1515 signal peptide" amino acids 1 to 33 (33 residues), see Phobius details TIGR02099: TIGR02099 family protein" amino acids 9 to 873 (865 residues), 661.8 bits, see alignment E=1e-202 PF13116: DUF3971" amino acids 527 to 808 (282 residues), 253.5 bits, see alignment E=3.3e-79 PF13502: AsmA_2" amino acids 1130 to 1370 (241 residues), 218.4 bits, see alignment E=1.1e-68

Best Hits

KEGG orthology group: None (inferred from 100% identity to saz:Sama_0472)

Predicted SEED Role

"FIG005080: Possible exported protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A1S2S6 at UniProt or InterPro

Protein Sequence (1515 amino acids)

>Sama_0472 membrane protein (RefSeq) (Shewanella amazonensis SB2B)
MAAFWRPASLGRICGLTLATLLVLFALGVSLIRSLLPQLEQARDRVTDYLWENYRIEVKV
SRLAAEWQAFGPSLTVENLILPPQEGLPLTLIIKRTDIKLDFWQTLMNREPTVEHVAFEG
VQIALDLDAMGGSGPQESVPVSNDTTRVKETTRVIDWLSPLLLEQLQQFALTDATVQLKS
KYHDFRPIYVGDLRWLNLDGRHRAEGYVYLDDRASVSERLSLQIDFKGDGSQPESIHGQL
YLAARALDLGEWAARQPNPFNEAEPLPLAGVVNFEAWADVANLSLMSALVQFSPSYVQWP
GLENQQRFAVDGGSLVWQRHGRGWLFGSDKLVLKSNGTLWPETGMAAMYDGVELKAKLDA
LDLGALSPLVPLIPGLTIDGLKTLLALHPQGQLQDMRLHHKALPGTAEQESARQLAISAG
FSGLGWQQVSHIPGLKQLDASVFFDGELLRASLPAQTLEVDFGTQAFKAPLVFHTPGIEL
GYDLSENALLAPSVQLENPDLAVDAAMKMVFSQPTHLALSAGVEVRDAARAGYYFPRAAM
GSDLADYLEGAIIAGRTRDAAVVWNGALQDFPYRDNSGIFQAGFVMDEANYAFQPDWPAV
TELSLRALFENLRMDIWVDEGKLRAVNAAGAHVYIPEMSHETVLHVEAALATTGPAATAV
LQASPLKHSVGAVLDVVKVQGAVKGDLDLVIPLYHGGKPDIQGLVLFDDTPVYLDTPGVQ
LNRLKGELRFANDRIEAEGLSARLFGQPLSLDVFGADDAKGYKVDTTLKSGWDLASLPPS
LDNPLSDFYAGVLAWQGSLGLTLPRAGGFNIEAEAESSLRNAELKLPPPFAKSVGVPMPL
KLTLQGNGEGLALDVFLDNKGHFAGHILPSSGTMDSFLLTLADSLNAPEGGGVSEKVSDS
QHSTTPDNPGVSEGVGVSTITAADANPTQANPESTPAENAIQGSEPTVPQSASVSAVTSL
AQSSRSAAGGRLDVTLRQASFNDWLPIIIGFVDSSTAVPASDNAQQVSPEALVNPEPQST
GFFPKLEGIFADIGQLTLFGQSLADAQIFARPEDGLWRVSTYANEFSGDIDLFPDWHRGG
IKLRASKLYLSPEFTEAEAEAKVLGDEQFSSNLPPIAVDVDDFRLYDRALGHLVLQGQPE
PGRYNFQTLSLSSGAATLKGQGGWLMDVNQTRMEFSLKADKFDALAQQLGITPGIKDSPL
DISAELFWQGAPHEFDLGSLSGGLKFALGKGSLTEISDKGARIFSLFSLDSLLRKLSLDF
TDVFGKGMFYNSFAGTLELDNGVVKTRDTEMDAIAGNMKVRGFTDLTTQSLNYDIRFVPQ
LASSVPTVVLLSTSAWTMGLGAFALTKVLEPVIEVISEIRFRLSGTMTDPMLEELERKSK
EIEIPESVLPRPKEGEAPASSADGAVSAEQGGVEQAQAAQSEPGQQAPEQAKPDSVPQSA
PVKDPVPEPTEEPESQIPETPSAAEPEPSSQLPGASEPVQLSHYLRHGEKHAGQFAAMPE
QPGCRGQSGLYRIAA