Protein Info for Sama_0470 in Shewanella amazonensis SB2B

Annotation: maf protein (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 194 TIGR00172: septum formation protein Maf" amino acids 1 to 188 (188 residues), 184.2 bits, see alignment E=8.9e-59 PF02545: Maf" amino acids 3 to 190 (188 residues), 208.3 bits, see alignment E=4.1e-66

Best Hits

Swiss-Prot: 67% identical to NTPPA_SHEDO: dTTP/UTP pyrophosphatase (Sden_3331) from Shewanella denitrificans (strain OS217 / ATCC BAA-1090 / DSM 15013)

KEGG orthology group: K06287, septum formation protein (inferred from 100% identity to saz:Sama_0470)

Predicted SEED Role

"Septum formation protein Maf" in subsystem Bacterial Cell Division or Bacterial Cytoskeleton

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A1S2S4 at UniProt or InterPro

Protein Sequence (194 amino acids)

>Sama_0470 maf protein (RefSeq) (Shewanella amazonensis SB2B)
MTLVLASQSPRRRELLAQAGLGVAGFSFERVNPDIDETPLVGESPANYVARLAVEKAKAG
LALCGHIQAPVVLGSDTIVVLDGALLGKPGDKADAVAMLNALSGREHEVMTAVALTDGDR
TLCDTVTTKVRFADLSRQDILAYVDTGEPMDKAGAYGIQGLGGVFVEAIDGSYSAVVGLP
LVESRRLLAAFSLI