Protein Info for Sama_0466 in Shewanella amazonensis SB2B

Annotation: MSHA biogenesis protein MshQ (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 837 PF20419: DUF6701" amino acids 244 to 836 (593 residues), 566.9 bits, see alignment E=3.9e-174

Best Hits

KEGG orthology group: K12287, MSHA biogenesis protein MshQ (inferred from 100% identity to saz:Sama_0466)

Predicted SEED Role

"MSHA biogenesis protein MshQ" in subsystem Mannose-sensitive hemagglutinin type 4 pilus

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A1S2S0 at UniProt or InterPro

Protein Sequence (837 amino acids)

>Sama_0466 MSHA biogenesis protein MshQ (RefSeq) (Shewanella amazonensis SB2B)
MQPPPNLPSKAGNFTCYTQGNNRHCSRSDAFGPGDFNFANGDFEKGSYLATNGATTRLYF
DNLTLKNTSIHQGYNPSHLIVYVRGNLHIEGHNFFKGILYVEGSIFMSGNATISGALAVH
GNVPSGGNFTPIIDLGVIDDADFGGMCDKQANVQIDHFLLQYSQSPLTCKAETVTVSACK
NSNCSELVTDPVSATLTATNAVTGWEGGNNISLVNGSAQKRLWHTVVAPPVTIGVGSSSP
VAVNPTLCQRGSGMPSTAACTFAFADSGLLFDVPDKLAGKAASITLSAVRKDDQSQRCVP
TFQNTTKQLAFWSDYLSPDAVALVGSPKVTVESSVIGTSAQDATSIPLSFNSQGEARLSV
NYPDAGQLALNARYVGGGSEGNLQLDGSDSFVSFPVGLCVKAKDPVASCPAGDATCAAYR
KTGDSFDLLISAHAWESDTDSEFCDNATTPNFAIQNIALGSALVAPVGGSDGVAGTASYS
HKAQAGANEIGQSISEVGVFRFSAQAPNTYLGSQFYRIPLAQSGNIGRFVPAGFALKNVS
LIPACGLLNSPSFSYMGQPTPLSMQLEAHNHQNQVTVNYRDDFAKGNAVLAAENDNDGQD
LSARLSVLAGKWQQGVMEFDSSSTFVFERTTAPGVDGPFEQLDIGLWVDDMDGDLSRLAP
LDMKPDSTGDCSILPGGCSAQRLGAVSMRHGRAVLDNTYGPETDILRMPAYAQYWNGSAW
TLSSEDSCSIASVPLSFQVDNPALGYLYQPGLLAGQSIDRSATPASFSQGQLPLFWQALG
SPGYRGQVTAPLDVPDWLHWYWNWSGSEPQTLSDPRASAYFGRYRGDDRIIFWREIN