Protein Info for Sama_0278 in Shewanella amazonensis SB2B

Annotation: endonuclease (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 900 951 PF10593: Z1" amino acids 432 to 665 (234 residues), 286.8 bits, see alignment E=6.3e-90

Best Hits

KEGG orthology group: None (inferred from 100% identity to saz:Sama_0278)

Predicted SEED Role

"Endonuclease"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A1S283 at UniProt or InterPro

Protein Sequence (951 amino acids)

>Sama_0278 endonuclease (RefSeq) (Shewanella amazonensis SB2B)
MALNPTEQKVLIFVQNMLEAGSQVTPAIIQEQINLVLNMKKEWRADTDESAVIDELIRRA
STWVGDDALLTNDEGHIAWLNQDRKQGWRYWQRYREYQEKKLSWNIVEGLDKSTDLILGN
LEDPKRQGPWDRRGLVVGHVQSGKTGNYTGLICKAADAGYKIIIVLAGMHNNLRSQTQIR
LDEGFLGFTTSVIQDEMHIVGVGEIDRDPAIRPNFATNRSEKGDFNTKAAKHLGISPEER
PWLFVVKKNKSVLERLLKWIQDHVANIQDPETGRKLVTHLPLLIIDDEADNASVDTGDQA
YDEFGKPDLEHEPTAINRLTRRILHSFTRKAYVGYTATPFANIFIHNRSETEKEGPDLFP
SAFIANLSASSSYIGPAKVFGRSSENGREGGLPLVKVVNDHCSEDEKSGWMPTKHRNGYY
PSSDQQHGIPESLRESVDAFVLACAARRLRGQKDEHCSMLIHVTRFTSVQGHVKEQVAAY
VDWLKRRLVRRIDHYDVINQLKQLWESDFLATTETIHSMHPDMVDENTLTWSQVEAELSD
AISEIEVRAINGFAKEALDYADSAVGLKVIAVGGDKLARGLTLEGLCVSYFLRASRMYDT
LMQMGRWFGYRPGYLDLCRLYTTIDLVEWFEHIADASEELREEFDLMTASGATPKEYGLK
VASHPVLMVTSRLKMRNAQSLYLSFSGQSVETVSLLKDLDSLKSNLQAFDRLTLRLGEPK
PIPDRNRNGSKKSGNGVQWTNVPAEVIVQFLSEYKTHPAAMKVNSRLLSDFIQNMNKEHE
LTSWTVAIINGGQERTYSIYGSSSVTVKLVKRTPKTITEDRYSIGRLLSPADEALDLDDD
AWDAALNETRNNWKNDPARSEKYNGEPPKEPNGPALRKVRGFGAGHIAGHPERGLLLIYL
LSPEGVDDSYDESTAPIVSFGISFPGSDSGTKVKYEVNNVLWEQEYDPSVY