Protein Info for Sama_0107 in Shewanella amazonensis SB2B

Annotation: hypothetical protein (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 527 signal peptide" amino acids 1 to 17 (17 residues), see Phobius details

Best Hits

KEGG orthology group: None (inferred from 100% identity to saz:Sama_0107)

Predicted SEED Role

"capsular polysaccharide biosynthesis protein" in subsystem Rhamnose containing glycans

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A1S1R3 at UniProt or InterPro

Protein Sequence (527 amino acids)

>Sama_0107 hypothetical protein (RefSeq) (Shewanella amazonensis SB2B)
MYLITSAAMVASELQSEFGPLPPCFLPVGNKRLFHHQLALIPAGERTIITLPEGFTPGPY
DSQSLKDYGVELLYLPPTLSLGESIVYALIQLEFADDEPLYILHGDTLFDSLPRQTDCLG
LSQVEDNYNWAEFDAQSGTLRPYHAELRPSSELISNGFFSFSAPRTLIRYITQAKGDFIA
GLNGYIDDKGLTPITLPHWYDFGHSHTYYQSKSRMTTQRAFNGMAIQGQVVKKFSRNKHK
LAAEANWYQSLPGPMRGYIPQLLGCDESPELFGYSIEYLHLTALNELYVFSQLPAFAWRK
VLKACCQFLKDASSYSVADAQTLSGLFMDKTLSRLEDFASQSGISVAQENRINGALRPSL
LELARISREYLPKDNGRQHLLHGDFCFSNILYDFRTCNIKVIDPRGLDGNDKQTIHGNGL
YDIAKLAHSVLGLYDAIIAGYFKAERLGQNLDFSIAITPRREQIMADFVRLMASEFAVSE
AELYAMQIQLFLSMLPLHSDRPDRQLGFIGNAYRLYDRLLACTGNPS