Protein Info for Sama_0061 in Shewanella amazonensis SB2B

Annotation: rhodanese-like protein (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 130 signal peptide" amino acids 1 to 21 (21 residues), see Phobius details PF00581: Rhodanese" amino acids 29 to 123 (95 residues), 78.1 bits, see alignment E=3.2e-26

Best Hits

Swiss-Prot: 46% identical to YIBN_ECOL6: Uncharacterized protein YibN (yibN) from Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)

KEGG orthology group: None (inferred from 100% identity to saz:Sama_0061)

Predicted SEED Role

"FIG136845: Rhodanese-related sulfurtransferase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A1S1L7 at UniProt or InterPro

Protein Sequence (130 amino acids)

>Sama_0061 rhodanese-like protein (RefSeq) (Shewanella amazonensis SB2B)
MLSLAWLGLFLAVVITTVKSMTSKVKHISTQELVQLVNKQNAKVVDVRGKEEFRKGHIVD
AMNISMSEIKNNQISALESAKKSPIILVCNAGMTSAQAAQLLVAQGFEQVYSLKGGMGDW
QAANLPVKKR