Protein Info for Shew_3827 in Shewanella loihica PV-4

Annotation: transposon Tn7 transposition protein TnsB (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 696 PF09299: Mu-transpos_C" amino acids 496 to 567 (72 residues), 29.6 bits, see alignment E=2.8e-11

Best Hits

Swiss-Prot: 49% identical to TNSB_ECOLX: Transposon Tn7 transposition protein TnsB (tnsB) from Escherichia coli

KEGG orthology group: None (inferred from 100% identity to slo:Shew_3827)

Predicted SEED Role

"Transposon Tn7 transposition protein tnsB"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A3QJP5 at UniProt or InterPro

Protein Sequence (696 amino acids)

>Shew_3827 transposon Tn7 transposition protein TnsB (RefSeq) (Shewanella loihica PV-4)
MFRINDVLEFDQERFRILRRLGDAFVWISIDSPSHFPALIDLDTLTEAIHNGALRRVDDP
YTDLILSSPPDGSVAQVKRDQNYELIGPIIESDDFFLPKVRAKAIEDVMSNNKTTKQTLY
RLIRQYWKRGQIPNALLPDYKNSGAKGKKRIPGEKKLGRPRKYEPGTGVNVDELIEKLFR
IAIQKYLLTDKGYSFPYAHRRFKDMYEAYFPDIPEEEIPTNWQMKHFYQREYSQVEKIKS
RVNRNKYNKDIRPLTGTANLHALGPGSRFEIDATIADIYVVSDANRSWIVGRPVVYIVID
VFSRLVVGFYIGFENPSYVAAIQAIKSAMTDKVELCHQFGLDIEAEDWPAIGLPDCILAD
RGELLGYQIENLEKSFSIRIENTPPFRGDAKGIVEQNFNVLQADYTPFAPGVVTGNTVRK
HGGKDYRLDAKLSISDFKEIIISSIIYHNKYHVLKKYDRSADMPVDLPNVPLELWNWGVK
NRTGRLRAASEASIRLSLLPRENATVSTLGICVFGVYYTCQEMIAEGWMHRAKEVSRPEK
VVVAYDPDSAYEIYLFPYTNSAEHWICKLSERSREFVNCSFWEVWQRQEQLKVTAANSRI
RASKHKREHERRVIDKIQQAEKLSPDVSALTKAERIAAIRPNRKAELQDEREARKPRVPE
NPEGTAEVIPLPNVVQENYDYPSYVDELFDDEDGNE