Protein Info for Shew_3680 in Shewanella loihica PV-4

Annotation: GCN5-related N-acetyltransferase (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 153 PF00583: Acetyltransf_1" amino acids 37 to 115 (79 residues), 32 bits, see alignment E=6.8e-12

Best Hits

KEGG orthology group: None (inferred from 100% identity to slo:Shew_3680)

Predicted SEED Role

"Protein export cytoplasm protein SecA ATPase RNA helicase (TC 3.A.5.1.1)" (TC 3.A.5.1.1)

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A3QJ98 at UniProt or InterPro

Protein Sequence (153 amino acids)

>Shew_3680 GCN5-related N-acetyltransferase (RefSeq) (Shewanella loihica PV-4)
MYTTSIEHHTQLSDELIDTLIGLSQEVPEFDGRHRAEDYQARLGGKTFLVQLIRIEGELA
GYKIGYGETNGEFYSWLGAILPEFRQLGLAKALMQDQESWAKTQGFNTLAVKTYNRFANM
LQLLIQQGYKIAGLENTAANIDDNKLVLNKLLS