Protein Info for Shew_3593 in Shewanella loihica PV-4

Annotation: hypothetical protein (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 241 transmembrane" amino acids 25 to 43 (19 residues), see Phobius details amino acids 63 to 83 (21 residues), see Phobius details amino acids 104 to 126 (23 residues), see Phobius details amino acids 132 to 155 (24 residues), see Phobius details amino acids 175 to 197 (23 residues), see Phobius details amino acids 205 to 227 (23 residues), see Phobius details

Best Hits

KEGG orthology group: None (inferred from 100% identity to slo:Shew_3593)

Predicted SEED Role

"FIG01058110: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A3QJ11 at UniProt or InterPro

Protein Sequence (241 amino acids)

>Shew_3593 hypothetical protein (RefSeq) (Shewanella loihica PV-4)
MESHMSLSAILTEAYNFFRNHIRQLAALTVPILFLQVGIQMWLGMEINSADLENPQFGVP
HMIAMMVLLLVFSLLIAALTLFMEVRSHGHEPSTGILLKTSLSFVPPLLLAGVFSGLAIL
APVMLFAAFGPIWLVGLVISIYVFARLAYVNFMVVVERLTPLEAIKGSFKFSGPIAFKTL
LVLMLYIPLSLIGGTLSSLAQSVGFPLVLVVEVLVAFFGLFVNVALFRLYMVSRPSIDEQ
V