Protein Info for Shew_3472 in Shewanella loihica PV-4

Annotation: 2-isopropylmalate synthase (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 523 PF00682: HMGL-like" amino acids 4 to 273 (270 residues), 338.7 bits, see alignment E=3.4e-105 TIGR00973: 2-isopropylmalate synthase" amino acids 4 to 498 (495 residues), 787.9 bits, see alignment E=1.6e-241 PF22617: HCS_D2" amino acids 287 to 367 (81 residues), 85.1 bits, see alignment E=5.3e-28 PF08502: LeuA_dimer" amino acids 369 to 499 (131 residues), 122.2 bits, see alignment E=2e-39

Best Hits

Swiss-Prot: 100% identical to LEU1_SHELP: 2-isopropylmalate synthase (leuA) from Shewanella loihica (strain ATCC BAA-1088 / PV-4)

KEGG orthology group: K01649, 2-isopropylmalate synthase [EC: 2.3.3.13] (inferred from 100% identity to slo:Shew_3472)

MetaCyc: 66% identical to 2-isopropylmalate synthase (Escherichia coli K-12 substr. MG1655)
2-isopropylmalate synthase. [EC: 2.3.3.13]

Predicted SEED Role

"2-isopropylmalate synthase (EC 2.3.3.13)" in subsystem Branched-Chain Amino Acid Biosynthesis or Leucine Biosynthesis (EC 2.3.3.13)

MetaCyc Pathways

KEGG Metabolic Maps

Isozymes

No predicted isozymes

Use Curated BLAST to search for 2.3.3.13

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A3QIP0 at UniProt or InterPro

Protein Sequence (523 amino acids)

>Shew_3472 2-isopropylmalate synthase (RefSeq) (Shewanella loihica PV-4)
MSNRVIIFDTTLRDGEQALAASLTVKEKLQIALSLERLGVDVMEVGFPVSSPGDFESVQT
IARTIKNSRVCALARALEKDIDAAAQSLSVAEQFRIHTFISTSTIHVESKLKRSFDQVLD
MAVGAVKYARRFTDDVEFSCEDAGRTPIDNLCRMVEAAIKAGAKTINIPDTVGYTVPSEF
GGIIQNLFDRVPNIDQAVISVHCHDDLGLSVANSITAVQHGARQIECTVNGIGERAGNCS
LEEIAMIIATRKASLGLETGINAKEIHRTSNLVSQLCNMPVQANKAIVGANAFTHSSGIH
QDGVLKSQNTYEIMTPESIGLNRNNLNMTSRSGRHVIKHRMEEMGYGEQDYDMDTLYEAF
LKLADKKGQVFDYDLEALVYVEAQAEDENHYGLQQLVVHSDSTQGQATATVTLSIDGKAV
TEAATGNGPVDAAYKAIARASGCEINISSYQLSAKGQGQDALGQVDITAKYHDQSFHGVG
LATDVVEASAAALIHVMNLTWRADKVAENKHKLKQARTELGGV