Protein Info for Shew_3358 in Shewanella loihica PV-4

Annotation: outer membrane efflux family protein, putative (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 426 signal peptide" amino acids 1 to 22 (22 residues), see Phobius details PF02321: OEP" amino acids 57 to 212 (156 residues), 39.9 bits, see alignment E=2e-14 amino acids 254 to 401 (148 residues), 42.3 bits, see alignment E=3.7e-15

Best Hits

KEGG orthology group: None (inferred from 100% identity to slo:Shew_3358)

Predicted SEED Role

"Outer membrane protein, probably efflux family"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A3QIC6 at UniProt or InterPro

Protein Sequence (426 amino acids)

>Shew_3358 outer membrane efflux family protein, putative (RefSeq) (Shewanella loihica PV-4)
MRKSLIATALLGAIWGAPLFAETLYSEAGEMAPAPLLAQIEQSGFQGWLAPLMSKVNQLP
EIQAQQAKVRQAQLLVEAADRPVYNPELGVSYQNASEDTYTLEVSQTLDWGDKRGIATRV
AQLEAEILLADNRLARSQLYGELLMALVEQAQQAKLLAFQGRLLESAKQQVAIAKQQLEA
GALSQAELQLMQLDLASKAADHASAEQASLAADASVLSRFGELELPFAEFIGALSVDTSQ
EVGPDLPALAGAYQQVMMAKLASQQVAADTNADPSISLSAEREGEENKLGVGLSIPIQIR
NDYREAKAAAGTQVAIAEQDYLARERRLTQAAKLFHLSLPRLQQRYREWRELVLTSGAGV
QDALSQQWRAGDISTSDYLQGQRQLANSYLAGLSLEGALYRSWLDWMGQSGQLENYLQRQ
LGREGV