Protein Info for Shew_3109 in Shewanella loihica PV-4

Annotation: hypothetical protein (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 289 signal peptide" amino acids 1 to 28 (28 residues), see Phobius details transmembrane" amino acids 37 to 57 (21 residues), see Phobius details amino acids 69 to 87 (19 residues), see Phobius details amino acids 93 to 112 (20 residues), see Phobius details amino acids 124 to 141 (18 residues), see Phobius details amino acids 147 to 165 (19 residues), see Phobius details amino acids 174 to 193 (20 residues), see Phobius details amino acids 205 to 226 (22 residues), see Phobius details amino acids 233 to 254 (22 residues), see Phobius details amino acids 260 to 279 (20 residues), see Phobius details PF00892: EamA" amino acids 10 to 137 (128 residues), 34.6 bits, see alignment E=1.1e-12 amino acids 147 to 277 (131 residues), 48.3 bits, see alignment E=6.5e-17

Best Hits

KEGG orthology group: None (inferred from 100% identity to slo:Shew_3109)

Predicted SEED Role

"Permease of the drug/metabolite transporter (DMT) superfamily" in subsystem Queuosine-Archaeosine Biosynthesis

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A3QHM7 at UniProt or InterPro

Protein Sequence (289 amino acids)

>Shew_3109 hypothetical protein (RefSeq) (Shewanella loihica PV-4)
MPQQPWIRLLLLTSVTMLAFAANSLFCREALASGSIGAASFTLIRIASGALVLGILASRH
IRAGELGGNWLSATALFGYAVAFSFAYNSLSAGTGALLLFGAVQITMILYGLWSGERINR
KQMIGALLAGAGLVWLVLPGVSAPPLIGAMLMIIAGVSWGVYSLLGRGTKRPTLATAGNF
IRAVPMALVPFALLSNSETISATGIGYAVASGALASGLGYALWYLVLPSLSAVTAATVQL
SVPIIAAFGGFIWIGEAFTSRLLLASIAVLGGIALFVMSKQSSHVIKDK