Protein Info for Shew_3077 in Shewanella loihica PV-4

Annotation: peptidase S10, serine carboxypeptidase (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 533 signal peptide" amino acids 1 to 49 (49 residues), see Phobius details PF00450: Peptidase_S10" amino acids 117 to 266 (150 residues), 51.3 bits, see alignment E=6.3e-18

Best Hits

KEGG orthology group: None (inferred from 100% identity to slo:Shew_3077)

Predicted SEED Role

"Carboxypeptidase-related protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A3QHJ5 at UniProt or InterPro

Protein Sequence (533 amino acids)

>Shew_3077 peptidase S10, serine carboxypeptidase (RefSeq) (Shewanella loihica PV-4)
MADIFTRRHSGLNLYNHLTHSLSRLKLSKQLLGAAGLSLLLLSLPGQAAQEKSNGKPAKT
EAQAPEAKVYQTTGQVKINGERVHYETIASETILEDDKDKPLASIFSVTYLRTKIEASQP
RPVTFVFNGGPGSASLWLHMGLFGPKRVVVPGDAQDDGAAPYHLVDNEFSMLDKSDLVFI
DPVGTGFSRALGEHKGQDFWGVKEDAQSIAEFIRRWLIEHGRWNSPKYIAGESYGTTRAA
ALVDELQSGWTDISVNGVMLISSILDFSHARYQPGNNQPYIGFLPTMAATAFYHDRVAAT
DKAMGLSAFVEAARQFAMNDYALALLKGTRLPQAQYQAVRQQLARFTGLTEDYLDRVNLR
VSASRYTKQLLRDEDRTVGRLDSRYLGVDYDSGGERTDADPSGYGIDGAYTAAIHQYLYQ
DLGVKITRPFNVLSVDVNRGWNWNISGKQMHYVNVAPYLGRAQRENKDFRILVANGYYDF
ATPFFATENTLADNGIDNSRVEMHYYEAGHMMYIEPSSLKALAKDIRQFYQAD