Protein Info for Shew_2836 in Shewanella loihica PV-4

Annotation: hypothetical protein (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 102 PF01985: CRS1_YhbY" amino acids 6 to 89 (84 residues), 99.5 bits, see alignment E=5.6e-33 TIGR00253: putative RNA-binding protein, YhbY family" amino acids 6 to 98 (93 residues), 120.8 bits, see alignment E=1.4e-39

Best Hits

Swiss-Prot: 72% identical to Y1333_HAEIN: RNA-binding protein HI_1333 (HI_1333) from Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)

KEGG orthology group: K07574, RNA-binding protein (inferred from 100% identity to slo:Shew_2836)

Predicted SEED Role

"FIG004454: RNA binding protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A3QGV4 at UniProt or InterPro

Protein Sequence (102 amino acids)

>Shew_2836 hypothetical protein (RefSeq) (Shewanella loihica PV-4)
MVEMNLTTKQKQHLKGLAHNLKPVVQLGANGLTEGVLAEIDNALSHHELIKVKVASGDRE
LKNAVVDAIVRETQAEKVQLIGHVLVLFRQSPEMKIAVPRAK