Protein Info for Shew_2697 in Shewanella loihica PV-4

Annotation: hypothetical protein (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 458 signal peptide" amino acids 1 to 28 (28 residues), see Phobius details PF11737: DUF3300" amino acids 38 to 270 (233 residues), 312 bits, see alignment E=1.1e-97

Best Hits

KEGG orthology group: None (inferred from 100% identity to slo:Shew_2697)

Predicted SEED Role

"FIG01200701: possible membrane protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A3QGG5 at UniProt or InterPro

Protein Sequence (458 amino acids)

>Shew_2697 hypothetical protein (RefSeq) (Shewanella loihica PV-4)
MKSIRQWTLLLLIALSQSLLTPSVSRAEDAVQEIQFSDAELAQMLAPIALYPDSLLTHIL
IASTYPLEVVQANRWRNKNKSLEGAEAVNRAEKKDWDPSVTALVAFPDLLQRLSDDLEWT
QKLGDTFLQDEERVLDSIQSLRQQAERANAFDDMENMKVTKVNRQIVIEPVQREVIYVPY
YDTRVVYGHWHWYNYPPVYWAYPPHYARYYPGHISGHFYFNSGIHISFNYFFSAFSWRQR
HIVVTHHHHTTRYRPYSRIVTSSGAQRWHHKPVHRHGVAYRSPKVKARYDKYRPNRYDVK
HNSSMERYSNSKQAKPSQAKHYNAAQVQKRREQNFSHKLSDARSQHDRHQNAQKTPTKYY
EKRDRLSLNDKANRSSSNKADNRTKEWNREKSPQRNDSYQREMKSHQRDNKSHQQQSYQR
ERSHQPVKSPQRERSHQTNNGRGASSHNQQGRTKQRDN