Protein Info for Shew_2406 in Shewanella loihica PV-4

Annotation: AraC family transcriptional regulator (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 337 PF12625: Arabinose_bd" amino acids 39 to 218 (180 residues), 57.7 bits, see alignment E=2.5e-19 PF12833: HTH_18" amino acids 259 to 335 (77 residues), 65.1 bits, see alignment E=9e-22

Best Hits

KEGG orthology group: None (inferred from 100% identity to slo:Shew_2406)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A3QFM4 at UniProt or InterPro

Protein Sequence (337 amino acids)

>Shew_2406 AraC family transcriptional regulator (RefSeq) (Shewanella loihica PV-4)
MTSNTRYQATLKVGDQSYPAYELRSLVHFMAERYGEHHAEQLCQEIGLGLNELAKLNFVY
VWQVDYAMAFLGNLADDPQIGARLGETYKVEELALIWPYLAKCQTLGECLEFVIAHPELV
GSVSDTLVSHGERSLYFRWLNTAKISAPYFSLQFQNSVCSMLALARQLTGQMVTLERVQL
ATPAHDSEFLAAFCQADVGFDGEFFEWAISHEMLSLPVVYDFSLLQLDKQALHDTSLIEK
VLAILNQDFPNNPKLESMALRLNMSDRTLRRHLASAGTSYQKLVDQVRCQTAIGLIVQGD
KSIVDIADIMGFGDVSHFRQSFKHWLGLPPGQFIRKI