Protein Info for Shew_2229 in Shewanella loihica PV-4

Annotation: ferrochelatase (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

Best Hits

Swiss-Prot: 68% identical to HEMH1_SHEON: Ferrochelatase 1 (hemH1) from Shewanella oneidensis (strain MR-1)

KEGG orthology group: K01772, ferrochelatase [EC: 4.99.1.1] (inferred from 100% identity to slo:Shew_2229)

Predicted SEED Role

"Ferrochelatase, protoheme ferro-lyase (EC 4.99.1.1)" in subsystem Experimental tye or Heme and Siroheme Biosynthesis (EC 4.99.1.1)

MetaCyc Pathways

superpathway of heme b biosynthesis from glutamate (10/10 steps found)
superpathway of heme b biosynthesis from uroporphyrinogen-III (6/6 steps found)
superpathway of heme b biosynthesis from glycine (7/8 steps found)
heme b biosynthesis I (aerobic) (4/4 steps found)
heme b biosynthesis II (oxygen-independent) (4/4 steps found)
heme b biosynthesis V (aerobic) (4/4 steps found)

KEGG Metabolic Maps

Porphyrin and chlorophyll metabolism

Isozymes

Compare fitness of predicted isozymes for: 4.99.1.1

Use Curated BLAST to search for 4.99.1.1

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A3QF47 at UniProt or InterPro

Protein Sequence (337 amino acids)

>Shew_2229 ferrochelatase (RefSeq) (Shewanella loihica PV-4)
MNKVDNLSPAKLGVLLVNLGTPDTPTPKDVKQFLKQFLSDPRVVDLNPWIWKPILNGIIL
NTRPKAVAKLYESIWWPEGSPLMVISERQREALSAILKARHGSDIPVELGMSYGNPSLSS
GIDKLVAQGVERLVVLPLYPQYSCSTVAPVFDAIASDYKGRRNYPETRFSKEYFEHPAYI
AALAGSVRRHWQDKGQGDCLLMSFHGVPLRYVTEGDPYQRQCQRTAELLAAALGLTESQW
RLCFQSKFGKEEWLTPATDALLESLPGKGVKRVDILCPAFAVDCLETLEEISIGGKESFI
EAGGEDYHFIPCLNEDEAHMQLLADLVDQQAAGWLKS