Protein Info for Shew_2173 in Shewanella loihica PV-4

Annotation: hypothetical protein (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1299 transmembrane" amino acids 42 to 65 (24 residues), see Phobius details PF04357: TamB" amino acids 960 to 1297 (338 residues), 195.1 bits, see alignment E=1.2e-61

Best Hits

KEGG orthology group: K09800, hypothetical protein (inferred from 100% identity to slo:Shew_2173)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A3QEZ1 at UniProt or InterPro

Protein Sequence (1299 amino acids)

>Shew_2173 hypothetical protein (RefSeq) (Shewanella loihica PV-4)
MIERPDGIDQGQMTQEQPLSAQGGEAPPRSLLYRLLCWLRNLVRVLLYLPLALLILLAIL
IGTPFGSRIAVNLADLLVPDLSLSYGGGTLNGQLQLEHAKWQMTGIEVETEGLSLNWRPL
CLLQRQVCVDSLGADAVRVDIDTDLLTASSPDAALKEKAAIDETSEHGPLTLPIGIILNQ
SDLNQIRVRVNEMQFNAEQLAAKASWLETGLRVNRLDSSGLLVSIPLGQSEDGTQPIQAK
NDRQDAQASWPLSQLPEVEIPMPIFVDGAHLVDSELRLGERIDKFAAIDLAGSYLGYKIT
VDSLAFSHDYGKARLDGEMSLTQDYPMALHLEAEFNANKISELPELKNQRLNAEINGGFS
ALAVKLKGEGHLELDLDAKGNLSTPAMPYEMTLSSRHLMWPLAQAQYEAKALTLESSGSL
ASQSLKLTGELKTPYHPWLSLNTQLTHQDQNVEVAALSVDSEMGKLDLKGKLGYGEAISW
QLEADTQDLDLAQLDVMPDKPLPETQISGSLHSQGRFSDKQWSVGISQADLQGQVDQYPL
RLQGDISLNDKFQLNAEHLQLDALESQLTLSGRVDDAWALDGQLSVPALSLWDPSASGAI
KAVINVSGDDEHPEVAINADTIEFKYADITVDKAKLIAFYRPQDAHQFALSLKSSGIKGQ
GMALSDLTLGFKGDIAKQKLGLQTYGDLQLNTSIASTFDEKTQRFDAKIKRISLNSRLGA
MALDEPFDLYWDNKHAKGEISPFCWRHDAASLCLTDTAELGDKGDTRLQFAGDLGALLAP
VLPENLKWRGPTQLDGELQWAKGAKPTGQLTLAMAPGQFDLTTTKRHIEAQYHYLNLTAR
LDELQLAIDTQLESERFAKIDSQLTISTDPEHRLSGKIDLKDIDLHALADFTPQLEVLDG
KVSSAIILGGTLNEPDLSGTVDLNDGQLAAAANPTLLDNIKLKLTLLGQTGQVKGQWTMG
DGKAKVDGVIGWQEGLKGDLNFSGDKLAIIQPPLAILDVSPDLDISFSDKHLDIRGKLDV
PSGHIKIVQLPEGGVAESSDVVFNDSLASQAQVKDPIAVTSQIAVKVGDKLTIDGMGLRG
MLVGTLELRQAAFKPPLLYGDIKVVNGNYKFMGQTLSIKAGEVQFIGPMAVPNLNIEAIR
EIKDEDVVAGVRITGTPLKPVVTLFSNPAKEQAEILSYIIKGTGLNNSSSDQNNALMMGA
ALTLGNQLGDNAFSNLGSSASGIIEKFGISNVQFDANDEGKVAISGFIGEDLMVKYGVGV
FNPGYEMTVRYYLMSQLYLESVSGTISKTLDIYYNFDID